Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02500 787 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT3G62720 776 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT1G74380 538 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT5G07720 534 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G18690 506 / 2e-177 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 293 / 7e-95 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 290 / 1e-93 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 108 / 4e-28 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037516 [exp] 934 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 930 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 751 / 0 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10019076 [exp] 538 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 536 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 535 / 0 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 529 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037520 [exp] 474 / 6e-169 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10011550 [exp] 313 / 3e-102 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G208000 [exp] 819 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 818 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 676 / 0 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.015G061800 [exp] 541 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 537 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 298 / 2e-96 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 290 / 2e-93 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025400 [exp] 69 / 3e-14 AT4G02500 68 / 8e-15 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10037519 pacid=23167335 polypeptide=Lus10037519 locus=Lus10037519.g ID=Lus10037519.BGIv1.0 annot-version=v1.0 ATGCTAGAACGGTGCCTCGGCCCTCAGCGGGTCCGCCGGATCGAAAGAGCTGCCCGGCAAGCCAAAGTCACCGTCCTATGCCTATTCATGACCGTCCTCG TCCTACGTGGCTTGTTCGGGGCCGGAAAGTACGGAACTCCGGCCCAGGACATCGAGGATCTGACGAGCCACTTCTACGCTTCCCGGAAGCACGCCGAGCC TCACCGCGTGCTCGTCGAGGCGCAGCCGGAGAACGAGGCCAAGACCGAAGACCCGAAGAATTACGCTACGTTCGACGTCAGCAAGATTATGGTGGACGAA GGCGAGGACGAGAAGCCCGATCCCAACAAGCCGTACACCTTGGGCCCCAAGATTTCCGATTGGGACGATCAGCGAGCCGATTGGCTGAGAAAGAACTCTA ATTTCCCCAATTTCATCAGAGAGAACAAGCCCCGGGTGCTCCTGGTCACCGGATCTTCTCCCAAGCCGTGCGAGAATCCAGTTGGCGACCATTACTTGTT GAAAGCGATCAAGAACAAGATCGATTATTGCAGGCTTCACGGGATCGAAATCTTCTACAACATGGCGCTGTTAGATGCTGAAATGGCCGGTTTCTGGGCG AAGCTGCCGTTGATAAGGAAACTGCTGCTGTCTCATCCGGAGATTGAGTTCCTTTGGTGGATGGACAGTGATGCCATGTTTACAGATATGGCATTTGAGT TGCCTTGGGAGAGGTATAAGGACGTCAATCTGGTGATGCACGGTTGGAACGAGATGGTTTACGATCAGAAGAACTGGATTGGGCTGAACACTGGAAGCTT TCTGCTGAGGAACGGCCAATGGGCATTGGATCTTCTGGACGCGTGGGCGCCAATGGGACCGAAAGGGAAGATTAGAGATGAAGCTGGGCAAGTACTCACT CGGGAGCTGAAAGACAGACCTGTTTTCGAAGCGGACGATCAATCGGCCATGGTTTATCTATTGGCCACACAGAGAGAAATGTGGGGGGAGAAGGTGTATC TAGAGAGCGCTTACTATTTGCACGGTTACTGGGGGATATTGGTGGACCGGTATGAGGAAATGATCGAGAATTATCATCCGGGATTGGGAGATCATCGATG GCCGTTGGTTACTCACTTCGTGGGTTGCAAACCTTGCGGGAAGTTCGGTGATTACCCAGTGGAAAGATGCTTGAAGCAAATGGATCGAGCTTTCAACTTC GGTGACAATCAAATTCTGCAGATTTATGGGTTCACACACAAAACCTTGGCTAGTAGGAGAGTTAAGCGGGTTAGAAACGAGACGAGCAATCCACTGGAAG CTAAAGACGAGCTCGGGTTGCTTCATCCTGCTTTCAAAGCTGTCAAAGTATCAACGACATCGTCTTGA
AA sequence Show only first row Show all	>Lus10037519 pacid=23167335 polypeptide=Lus10037519 locus=Lus10037519.g ID=Lus10037519.BGIv1.0 annot-version=v1.0 MLERCLGPQRVRRIERAARQAKVTVLCLFMTVLVLRGLFGAGKYGTPAQDIEDLTSHFYASRKHAEPHRVLVEAQPENEAKTEDPKNYATFDVSKIMVDE GEDEKPDPNKPYTLGPKISDWDDQRADWLRKNSNFPNFIRENKPRVLLVTGSSPKPCENPVGDHYLLKAIKNKIDYCRLHGIEIFYNMALLDAEMAGFWA KLPLIRKLLLSHPEIEFLWWMDSDAMFTDMAFELPWERYKDVNLVMHGWNEMVYDQKNWIGLNTGSFLLRNGQWALDLLDAWAPMGPKGKIRDEAGQVLT RELKDRPVFEADDQSAMVYLLATQREMWGEKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNF GDNQILQIYGFTHKTLASRRVKRVRNETSNPLEAKDELGLLHPAFKAVKVSTTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	0	1
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	1.0	0.9390
AT3G06150			unknown protein		Lus10004424 [exp]	4.2	0.8874
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	5.2	0.8853
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	6.3	0.8761
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	7.2	0.8835
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	8.4	0.8757
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	8.5	0.8546
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10036213 [exp]	10.2	0.8752
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	10.5	0.8718
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10030884 [exp]	13.4	0.8747

Compare expression of checked genes

Lus10037519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.