Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02500 449 / 2e-159 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT3G62720 429 / 2e-151 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT1G74380 321 / 4e-109 XXT5 xyloglucan xylosyltransferase 5 (.1) AT1G18690 320 / 6e-108 Galactosyl transferase GMA12/MNN10 family protein (.1) AT5G07720 317 / 2e-107 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 157 / 7e-46 Galactosyl transferase GMA12/MNN10 family protein (.1) AT2G22900 155 / 7e-45 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037519 [exp] 473 / 6e-169 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 466 / 5e-166 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 465 / 7e-166 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10019076 [exp] 321 / 2e-109 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10021631 [exp] 320 / 2e-108 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 318 / 2e-108 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10000563 [exp] 319 / 5e-108 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037514 [exp] 279 / 2e-93 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10011550 [exp] 163 / 8e-48 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025300 [exp] 446 / 2e-158 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.008G208000 [exp] 446 / 2e-158 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 356 / 2e-123 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.012G068300 [exp] 325 / 7e-111 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.015G061800 [exp] 322 / 3e-109 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 151 / 2e-43 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.014G006100 [exp] 147 / 6e-42 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.010G025400 [exp] 68 / 6e-15 AT4G02500 68 / 8e-15 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10037520 pacid=23167258 polypeptide=Lus10037520 locus=Lus10037520.g ID=Lus10037520.BGIv1.0 annot-version=v1.0 ATGGCATTTGAATTGCCTTGGGAGAGGTATAAGGACGTCAATCTGGTGATGCACGGTTGGAACGAGATGGTTTACGATCAGAAGAACTGGATTGGGCTGA ACACTGGAAGCTTTCTGCTGAGGAACAGCCAATGGGCATTGGATCTTCTGGACGCATGGGCGCCAATGGGACCAAAAGGGAAGATTAGAGACGAAGCTGG GAAAGTACTCACTCGGGAGCTGAAAGACAGACCTGTTTTCGAAGCGGACGATCAATCTGCCATGGTTTATCTATTGGCTACACAGAGGGAAATGTGGGGG GAGAAGGTGTATCTAGAGAGCGCTTACTATTTGCACGGTTACTGGGGGATATTGGTGGACCGGTATGAGGAAATGATCGAGAATTATCATCCGGGACTGG GCGATCATCGGTGGCCGTTGGTTACTCATTTCGTGGGTTGCAAACCTTGCGGGAAGTTCGGTGATTACCCAGTGGAAAGATGCTTGAAGCAAATGGATCG AGCTTTCAACTTCGGTGACAATCAAATTCTGCAGATTTATGGGTTCACACACAAAACTTTGGCTAGTAGGAGAGTTAAGCGGGTTAGAAACGAGACGAGC AATCCACTGGAAGCTAAAGACGAGCTTGGGTTGCTTCATCCTGCTTTCAAAGCTGTCAAAGTATCAACGACATCGTCTTGA
AA sequence Show only first row Show all	>Lus10037520 pacid=23167258 polypeptide=Lus10037520 locus=Lus10037520.g ID=Lus10037520.BGIv1.0 annot-version=v1.0 MAFELPWERYKDVNLVMHGWNEMVYDQKNWIGLNTGSFLLRNSQWALDLLDAWAPMGPKGKIRDEAGKVLTRELKDRPVFEADDQSAMVYLLATQREMWG EKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKTLASRRVKRVRNETS NPLEAKDELGLLHPAFKAVKVSTTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	0	1
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	1.0	0.9390
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	2.8	0.9071
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	3.0	0.9038
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	3.9	0.8862
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	4.0	0.8987
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	5.5	0.8852
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	6.3	0.8744
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001174 [exp]	6.5	0.8670
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	8.5	0.8686
AT3G22530			unknown protein		Lus10004901 [exp]	9.0	0.8735

Compare expression of checked genes

Lus10037520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.