Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62720 106 / 4e-28 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 79 / 4e-18 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT5G07720 47 / 4e-07 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 45 / 3e-06 XXT5 xyloglucan xylosyltransferase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037514 [exp] 182 / 5e-57 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10037519 [exp] 182 / 1e-56 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037516 [exp] 181 / 2e-56 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 176 / 2e-54 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10021631 [exp] 46 / 2e-06 AT5G07720 766 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019076 [exp] 44 / 6e-06 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 43 / 2e-05 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G025300 [exp] 128 / 4e-36 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.008G208000 [exp] 120 / 2e-33 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 100 / 1e-25 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.012G068300 [exp] 46 / 1e-06 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.015G061800 [exp] 45 / 2e-06 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037521 pacid=23167339 polypeptide=Lus10037521 locus=Lus10037521.g ID=Lus10037521.BGIv1.0 annot-version=v1.0 ATGCTAGAACGGTGCCTCGGCCCTCAACGGGTCCGCCGGATCGAAAGAGTTTTCCGCCACGCCAAACTCACCGTCCTATGCCTATTCATGACCGTCCTCG TCCTACGTGGCTTGCTCGGCGCCGGAAAGTACGGAACTCCGGCTCAGGACATTGACGATCTGACGAGCCACTTCTACGCCTCACGGAAGCACGCCGAGCC TCACCGCGTGCTCGTCGAGGCGCAGCCGGAGAACGAGGCCAGGACCGAAGACCCGAAGAATTACGCGACGTTCGACGTCGAGGGAGAGCGGACAGTCCCG CCCCAAACACGCCGTCCCTCGTGGGCCCAAGGATTCCCGATTGGGACGATCAGCGAGCCGATTGGCTGA
AA sequence Show only first row Show all	>Lus10037521 pacid=23167339 polypeptide=Lus10037521 locus=Lus10037521.g ID=Lus10037521.BGIv1.0 annot-version=v1.0 MLERCLGPQRVRRIERVFRHAKLTVLCLFMTVLVLRGLLGAGKYGTPAQDIDDLTSHFYASRKHAEPHRVLVEAQPENEARTEDPKNYATFDVEGERTVP PQTRRPSWAQGFPIGTISEPIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Lus10037521 [exp]	0	1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	1.0	0.9250
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	7.1	0.8662
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10035439 [exp]	7.3	0.8494
AT3G26370			O-fucosyltransferase family pr...		Lus10036875 [exp]	9.2	0.8659
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	9.6	0.8938
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10024531 [exp]	10.5	0.8621
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	14.0	0.8689
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	15.2	0.8657
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	19.2	0.8706
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	20.4	0.8247

Compare expression of checked genes

Lus10037521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.