Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15840 908 / 0 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002874 [exp] 1619 / 0 AT4G15840 947 / 0.0 BTB/POZ domain-containing protein (.1) Lus10002873 [exp] 1410 / 0 AT4G15840 753 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014000 [exp] 1216 / 0 AT4G15840 1028 / 0.0 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10037522 pacid=23167021 polypeptide=Lus10037522 locus=Lus10037522.g ID=Lus10037522.BGIv1.0 annot-version=v1.0 ATGGAACCGCAATACCCTAGCATCGCCAGGCCTCGCTCCTTCGGGCAAGTGAAAGTGACGATTCAGCCATCCTCCACCCCACAGCAGCACTCCTCCGACA ATGACCACACCAATACTACTGACCTCCGGGCCTTGGATTGTAATCTCAATTCTCTCTGCGATCACATTCAGATGGAAGGTTTCGATTCCGGTTCCTTCTC CGATGTTGTTGTTCATGCTATGGGCTCTACCTATCGCCTCCACCGCCTTATCCTCTCTCGCAGCTCTTACTTCAGGAACATGCTTCATGGTCCTTGGAAA GAAGCAACTTCTCCTGTTGTGAACTTGAATGTAGATGATAAGAATGTGAACGCTGACGCAATTGAAACGACCTTGGCTTATTTGTATGGACATCATCCCA AACTTGATGATAATAATGCATTCCGTGTTCTGGCAGCTGCTTCCTTTCTTGACCTCCAGGACTTGTGTGCAATATGTACAGACTTCATCATCTCTGAACT CTGGAGTTCAAACTTCTTGGCATATCAGGTCTTTGCTGAGAGCCAAGATTATGGTGAATATGGAGAACGAGTAAGGAATGCTTGCTGGGGTTATCTTTGT CAAAGTGGATCCATGGAACTGAAAGAGGTTCTTCCGAAGCTTTCATCTCAAACTCTGCATGCATTGTTGACCTCAGATGAATTGTGGGTAGCTAGTGAAG AGAAACGGTTTGAGCTGGCACTGTACACCCTTCTATCAAAAAGTGCTTTTTCCAAGAGAGAAAGATCTGACGGTGGCACCTCCGTATCTGAGTTGTGTGT GAGTATGCATAGTGATTCTTCCCAAATGAAAGGCAAAGAATTGATTGATAACGCTAAGACTGGTTCAGGACGGTTAAGTTTAAAAGATGACCTAGAAGGT CAGGCTATGGCACATAATCTTCTGGTTGATCTTGTTGAGTGTGAAGTCGACTATCGAGGGCCACAAGTTTCGTATTCACATTCTAATGTGGGAATGGGAT CCTTGCACTCAAGCAGCATGACACAATCATCTCCCATGAGTAACTCATTTTCACAAATAAATGGAAATACAAACTCGTGCTCTTATGTTGAAATGCCCAT TGGCACAAGTGGACTGGCAGCTAGTGAATTTGCCGTGGAGGGTCCTTCTGGGGAAACCTCCTACCAATTGAACAAAAACAATTGGCTTGGAAGTGACCAA TCTGGGAATAGCCCTTCAGCAGATCCTTCTTGCAGTGGGCTTATGCTTAATGATCGTGGAAGATGTGACATGAATTCCCTCTCATGGGGCGGAAGAGTCG TGGGAGAAAGGCAGGTCAAGAGTTATGCTAAAGCAAACTGTGGTGTTCACGGAGAGGACTATGATACATTTGTGAACATATTTGAAGGGGAGTCTCTCTT GTACTGCAACATGTCTTTTGAGGCACTCTTGAATGTGAGAAAACAACTTGAGGAGTTAGGTTTCCCATGTAAGGCTGTCAATGATGGTCTTTGGCTGCAG ATGCTATTAAGCCAAAGAGTACAGGAAACGGGTGCCGACACATGTAAACTATGCTGCTTCACCAGCATGTCATGCACTTGCAGACAGCAATTTGGATTTT CACGTCAAGAGCATGAGCATACCAATTCCCCAGTCAACATGGGAAATGTGTATGTTGCTGATTCTGCTCCAGGGGGCGGGAACAGTGTCTTTAGACCAGT TCGTGTCCATGTCAGGGGACCTGGTGATGGGCTTGCTGGCATTGGACGTGGAACTACGTTTGTGCCGGCAGCTGCCTGGCCCACTACCCGTTTTGTCTTT TCACGAGTGCCCTTCGGTATTGGCAATAGAAATGGCCAACAGCAGTCTCTTCCAAATGATGATTCAGAGAGTAGAACCGATCACACAGGGGACCTTTCTG GTGATGGGTTAACTGCTCTGGTTGGTTTAAGCCAGGGAGGGGTCAGCACTTCTAATGTGCAGACTCAACATACAGAGAGAGGTTACGAGACAGATATGCA AGAGAGAATATCTTCTTCTGCTCCAATTACTAGTTCTGCTCCAAGTACCAGTGGTGTTGCTGTTCAGGTACTGGATTCACCTGAACAAGCCATCGGCATT GAATGGGAAAGTGAAAATGATTCCTCCATATCATTGGACATAAATACACCTTTGAGCCATTTTCCTCCTTTCCGGTTTGGGGTTGAATTTGCGGATGTGC TTCGTCTAAGCAATGGCCAAGTCAAGCATTCTCCTGAATTTTTCTATGCCGGCTCCCTGTGGAAGGTTAGTGTTCAGGCTTTCAATGACGAAGATCCTCA AGGTCGCCGGACCCTTGGATTGTTTCTCCATCGACGAAAGGCAGAGATCACTGATTCACTAAGAAAGGTTCATATGTACATTGACTCGCGTGAAAAAGTT ACTGCCCGTTATCAGTTGATATGTCCATCGAAAAGAGAAGTGACAGTGTATGGAAGCTTGAAACAAAGAGGCACCCTTCTACCGAAAGCTCCGAAAGGAT GGGGATGGAGAACAGCTTTGTTCTTCGACGAGCTAGCTGAACTCCTGCAAAACGGGACCTTAAGGGTTGCTGCAGTCGTCCAGCTTGTCGATGTTCGGCA GAGTAGCCTCTGTCGGGTTGGATCTCGTTGTCATCGACGGGTTGGACATGGTGACGTGGCAGGCTTCGAGCTCGGTTCACATTGTCAGTTTCTTGACAGG GAAATGGCGTCGGGGATCTGA
AA sequence Show only first row Show all	>Lus10037522 pacid=23167021 polypeptide=Lus10037522 locus=Lus10037522.g ID=Lus10037522.BGIv1.0 annot-version=v1.0 MEPQYPSIARPRSFGQVKVTIQPSSTPQQHSSDNDHTNTTDLRALDCNLNSLCDHIQMEGFDSGSFSDVVVHAMGSTYRLHRLILSRSSYFRNMLHGPWK EATSPVVNLNVDDKNVNADAIETTLAYLYGHHPKLDDNNAFRVLAAASFLDLQDLCAICTDFIISELWSSNFLAYQVFAESQDYGEYGERVRNACWGYLC QSGSMELKEVLPKLSSQTLHALLTSDELWVASEEKRFELALYTLLSKSAFSKRERSDGGTSVSELCVSMHSDSSQMKGKELIDNAKTGSGRLSLKDDLEG QAMAHNLLVDLVECEVDYRGPQVSYSHSNVGMGSLHSSSMTQSSPMSNSFSQINGNTNSCSYVEMPIGTSGLAASEFAVEGPSGETSYQLNKNNWLGSDQ SGNSPSADPSCSGLMLNDRGRCDMNSLSWGGRVVGERQVKSYAKANCGVHGEDYDTFVNIFEGESLLYCNMSFEALLNVRKQLEELGFPCKAVNDGLWLQ MLLSQRVQETGADTCKLCCFTSMSCTCRQQFGFSRQEHEHTNSPVNMGNVYVADSAPGGGNSVFRPVRVHVRGPGDGLAGIGRGTTFVPAAAWPTTRFVF SRVPFGIGNRNGQQQSLPNDDSESRTDHTGDLSGDGLTALVGLSQGGVSTSNVQTQHTERGYETDMQERISSSAPITSSAPSTSGVAVQVLDSPEQAIGI EWESENDSSISLDINTPLSHFPPFRFGVEFADVLRLSNGQVKHSPEFFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDSLRKVHMYIDSREKV TARYQLICPSKREVTVYGSLKQRGTLLPKAPKGWGWRTALFFDELAELLQNGTLRVAAVVQLVDVRQSSLCRVGSRCHRRVGHGDVAGFELGSHCQFLDR EMASGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	0	1
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	2.0	0.9454
AT1G30010			Intron maturase, type II famil...		Lus10042828 [exp]	2.4	0.9199
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	3.9	0.9261
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10035436 [exp]	4.5	0.9225
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10031984 [exp]	5.7	0.9054
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	5.7	0.9248
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	6.9	0.9273
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	8.7	0.9082
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10043104 [exp]	9.2	0.9104
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	9.9	0.9095

Compare expression of checked genes

Lus10037522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.