Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15940 729 / 0 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G52420 704 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G80000 237 / 1e-66 CASC3/Barentsz eIF4AIII binding (.1.2) AT1G15280 181 / 7e-48 CASC3/Barentsz eIF4AIII binding (.1.2) AT1G19710 140 / 1e-34 UDP-Glycosyltransferase superfamily protein (.1) AT1G75420 132 / 2e-32 UDP-Glycosyltransferase superfamily protein (.1) AT5G01220 44 / 0.0006 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011469 [exp] 1141 / 0 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011468 [exp] 949 / 0 AT1G80000 281 / 9e-86 CASC3/Barentsz eIF4AIII binding (.1.2) Lus10024281 [exp] 131 / 6e-32 AT1G75420 689 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10028338 [exp] 131 / 3e-31 AT1G75420 642 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10041786 [exp] 130 / 3e-31 AT1G75420 647 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10008732 [exp] 49 / 2e-05 AT4G01210 1264 / 0.0 glycosyl transferase family 1 protein (.1) Lus10002154 [exp] 48 / 6e-05 AT4G01210 1268 / 0.0 glycosyl transferase family 1 protein (.1) Lus10002499 [exp] 44 / 0.0007 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10004832 [exp] 44 / 0.001 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179000 [exp] 852 / 0 AT3G15940 794 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G178900 [exp] 490 / 7e-158 AT1G80000 272 / 3e-82 CASC3/Barentsz eIF4AIII binding (.1.2) Potri.003G056500 [exp] 457 / 1e-145 AT1G15280 152 / 4e-39 CASC3/Barentsz eIF4AIII binding (.1.2) Potri.002G031300 [exp] 143 / 6e-36 AT1G75420 644 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.005G118800 [exp] 142 / 2e-35 AT1G75420 654 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G112600 [exp] 45 / 0.0003 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09405 [flax] [poplar] Btz CASC3/Barentsz eIF4AIII binding CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10037523 pacid=23167162 polypeptide=Lus10037523 locus=Lus10037523.g ID=Lus10037523.BGIv1.0 annot-version=v1.0 ATGTCGAAGGAAGTGGGAGAAGAGGTTGACTATGATAGCGATCCGGAGGAGGAGAAGCGTCTGCTGGGAATGCGAAGGCGTGAGGCTGCCAGTGATGACG AGGAAGATGATGCGGAATCGGAGAAGCAGCAGAAGGAGAAGAATCCAATGGATCGGAGGGCTCCAGTACTGTCTGATGAATCTGATGACCAAGGTGGGGC TGCCGATTACGACTATGAGGATGAAGAATCCCAATTAGATGGAGGAGCCGAAGAAGAAGAAGAAGAAGAAGAAGTCTATGACGATGAGGATGATGTAGTG GATGAGGAAGAGGGAGTTTACGAGGATGGAAGGGGAAAAAACACAATTGAGAAGAGAGGCATAGGAGTAGGAGTTGATGGAGTTAAGGGTGATGCCATAG ATATGGAGGGTAGAGAGTTGGAACCAGGAATGGAGGATGTTGGAGAGGCTGGGGATAATGTTGAGGGAGAGGAGGGGAAGAAGGAGAATGAACCTTTTGC TGTTCCAACTGCTGGGGCTTTTTACATGCATGATGATCGGTTCAGGGAGAGTACTGGTGGTCGAGGCGGGCGAGCATTTGGTGGAAGGAAGCTATGGGAG TCCAAAGATGATAAGAAGTGGGGTCATGACAAATTCGAAGAACTTACATCGCATGAAATACATCATGACCAGGGAAGGAGGAATTCCAGAGGTAGTTTCC GAGGTCGTGGTGGAAAAGGTTGTGGTCCTGAACAAGGCTATGGAAGAAGGAACAGATCTGGTGCATTCAGCAATGGTAACACTCAGAATCAGGCTCCTAA AGGTGTGAGAGGGAGAGGCCCTAGAAAATATGAACCTAGGTGGAATAACAATAGCCAGGGACCTCCTCCACAAAGCAAGCAGCCTGTTGAGAAAATGTCA CATGATTCTTCGCGGAGAGCAGCCACAGCTATGCCAAATTCAGAATCAGATCAATTGCCCCCTGCAAGAAAACTTTCTGGCTTAAATTCAGCATCCCCTC CTTTTTATCCCTCTGGGTCTTCAAGTAAAGATGCTGCTCAGTCACATAAAAATGATTTGCAAGGTGGAAGCACAAGTAGGAATGTCCGTAACTCTGTTGC AGAGGGAACTTTCAATGTTAAGCAGACTGGTTCATTAGGACGTGGGAAGAATGTGTCTGACACTGTTGGCATTGACAAGCTTTACATTGATGAACCCGCC ACTTTAACTTCAGGGAAAGGCTCGAACAATGTTCAAATGCTACCTGCTGGTTCTTCTATGATCAACTCATCACGGGCATCTCAAACCAGGGCTCAGGGTA GAGCTGGACCTGTTCCTGGACAGGTTGGTTACTTGCCAACTGCGCCTCACAACCAACTCAACAGAATCTCTCCAGCAGCTCAACATCATGTGGTTCAGCA GAGCGTTATCCAAGGTCGGGTTCAGTCCTCTGTTCAAGCTCCTAACCAGCAGTTATCACAGCATTCTGGTGGAGGTTCTCGAGCTTCTTCTCCACCCAAT TCAGCTATGTCAGAGAATTCTTATGAACACGAAGCTGAAAGTACTTCGGATTCTAGTAAATCAAGGAGTGCGTTGGTTGGGAAGGCAAAAGGGAGTGGAA CAGGGCAATTTCTGTATGGCGGGGCTCAAGTTGGCCCCGGTGATCAGAACTTCCCACCTGCATTCTTACCTGTTATGCAATTCGGAGGGCAGCATCCTGG TGGCATTGGCGTTCCTGCCGTCGGCATGGCTTTTCCTGGATATGTTTCTCAATCCCAGCACGGTGTAGGAAACTCAGAAATGACATGGTTGCCAGTTTTA ACTGGTCCCGCAGGAGGTTTAGGTGCCACATACTGTCCTCCTTATATTACCGTTGATGGTTCTTATCATTCGGGGCAGCCATCCTCTATGAGTTCTTCAA GTGGGGGATTAGGACTTGGCGATGGTCAACAAGCGATAGTGATGGAGGAAAGCATAATCAGACCAGATTTGCATGTGAATGTTACTAGGCAATCGCCATT GAGGCCAAATGGAAGAGCAACACCTAGAAACTCTCCTACATACAAGAGGTTAAACTCCAGCAGAACACCAAGGAGGGATGGGAGGAGCAGTGGAGGTGGA CTGCAGTGGTTTCGGAGCAGTCGGATAGTGTACTGGCTTCTTCTGATTACTCTCTGGACTTACCTTGGGTTCTATGTTCAGTCCAGGTGGGCTCACGACA ATAACAAGGAAGAGTTTCTCGGTTTCGGGGGTAGGAATGGAGTTGTACATTCTGAGATTAGTGAAGCCACTGTTCGTAGAGATTTGTTAGGCAATGAGAC TTCACTAGCTGTAAATAACAAGATTGAGGTGGAAGATGGGAAAGGGATAGAGGTAAGTTTGGCCAAGAAGGAAAATGAAGCTTCATCCCATCATACTGTA GTTCCAAAGAAGAAGGATAAGAAACCGGTCCGCAGGCTACGACGTAGAGCCCGTGGTAGAAAGAAGGCGAAGATAGAGGATGAAAGCAATGAGCCAGAGG TGCAAGAGCTAGAGATTCCTAAACGGAATACTTCTTACGGTTTGCTTGTTGGTCCATTTGGGACAACCGAGGATCAAGTGTTGGGATGGAGTCCCGAGAA GAGGACTGGAACCTGCGATAGGAAGGGCGCCTTTGCACGTCTTGTATGGTCTAGGAAGTTTGTTTTGGTCTTCCACGAGCTATCCATGACTGGAGCACCT CTTTCCATGTTGGAATTAGCAACAGAACTTTTGAGCTGCGGAGCCACTGTGTCAGTTGTAGTTCTCAGTAGAAAAGGTGGGTTGATGCCGGAACTTGCCA AGAGAAGGATCAAAGTACTTGATGACAGAGCAGATCTCAGCTTCAAAACTGCCATGAAGGCCGATCTTGTCATTGCTGGTTCAGCGGTTTGTACCTCTTG GATAGATCAATATATCACTCGCTTTCCAGCCGGGGGAAGTCAAATTGTATGGTGGATAATGGAAAACAGGAGGGAGTACTTCGATCGCTCGAAGATTGTC CTCGATAGGGTCAAAATGGTAGTCTTCCTCTCCGAATCCCAGTCCAGACAATGGCTAACCTGGTGCGAGGGGGAGAGCATTAAACTCAGATCTCCACCAG CAGTGGTGGATCTTTCTGTGAACGACGAACTCGCTTTTGTAGCGGGAATTCCATGCTCACTAAACTCTCCATCCTCTAGTCCAGAGGAGATGCTTGAGAA GAAGCAGTTACTCAGGAATTCAGTTAGAGGAGAGATGGGACTGAATGACAACGATATGCTTGTAATGTCCCTCAGCAGCATCAACCCAGGCAAGGGTCAG CTGTTACTTCTTGAATCAGCAAAGATGTTGGCCGAATCTGACGATTCCTTATTGAACCTGGCCGATAAGCATCATTTGAGATCTTTATTGCAAGATCAAC AACACCGTACTGGTGGAGTAGCACAGGAATCAGTTATCAAAGTTCTTGTGGGATCCGTGGGATCTAAGAGCAATAAGATACCTTATGTCAAAGAAATTCT GGGGTTCGTCTCGCGGCATTCGAACTTGTCAAAGACTGTGCTGTGGACTCCTTCGACGACTCGCGTGGCCTCGCTTTATTCTGCTGCAGATGTCTACGTC ATAAATTCCCAGGGGATTGGAGAAACATTCGGAAGAGTTACCATTGAAGCAATGGCATTCGGTCTTCCGGTGGTGGGAACGGATGCGGGAGGGACGAAGG AGATAGTGGAGCAGAACGTAACGGGGCTGCTCCACCCGGTGGGGAGGCAAGGGATCCGCGTACTGGCGGAGAACTTGAGATACCTGATGAAGAACCGGGA AGTGAGGAAGGGAATGGGGAAGAAAGGGAAGGAGAAAGTAGAGAGGAAGTACCTGAAGAACCATATGTACAGGAAATTCGGAGAGCTGCTCTACAAGTGT ATGCAGATCAAGTGA
AA sequence Show only first row Show all	>Lus10037523 pacid=23167162 polypeptide=Lus10037523 locus=Lus10037523.g ID=Lus10037523.BGIv1.0 annot-version=v1.0 MSKEVGEEVDYDSDPEEEKRLLGMRRREAASDDEEDDAESEKQQKEKNPMDRRAPVLSDESDDQGGAADYDYEDEESQLDGGAEEEEEEEEVYDDEDDVV DEEEGVYEDGRGKNTIEKRGIGVGVDGVKGDAIDMEGRELEPGMEDVGEAGDNVEGEEGKKENEPFAVPTAGAFYMHDDRFRESTGGRGGRAFGGRKLWE SKDDKKWGHDKFEELTSHEIHHDQGRRNSRGSFRGRGGKGCGPEQGYGRRNRSGAFSNGNTQNQAPKGVRGRGPRKYEPRWNNNSQGPPPQSKQPVEKMS HDSSRRAATAMPNSESDQLPPARKLSGLNSASPPFYPSGSSSKDAAQSHKNDLQGGSTSRNVRNSVAEGTFNVKQTGSLGRGKNVSDTVGIDKLYIDEPA TLTSGKGSNNVQMLPAGSSMINSSRASQTRAQGRAGPVPGQVGYLPTAPHNQLNRISPAAQHHVVQQSVIQGRVQSSVQAPNQQLSQHSGGGSRASSPPN SAMSENSYEHEAESTSDSSKSRSALVGKAKGSGTGQFLYGGAQVGPGDQNFPPAFLPVMQFGGQHPGGIGVPAVGMAFPGYVSQSQHGVGNSEMTWLPVL TGPAGGLGATYCPPYITVDGSYHSGQPSSMSSSSGGLGLGDGQQAIVMEESIIRPDLHVNVTRQSPLRPNGRATPRNSPTYKRLNSSRTPRRDGRSSGGG LQWFRSSRIVYWLLLITLWTYLGFYVQSRWAHDNNKEEFLGFGGRNGVVHSEISEATVRRDLLGNETSLAVNNKIEVEDGKGIEVSLAKKENEASSHHTV VPKKKDKKPVRRLRRRARGRKKAKIEDESNEPEVQELEIPKRNTSYGLLVGPFGTTEDQVLGWSPEKRTGTCDRKGAFARLVWSRKFVLVFHELSMTGAP LSMLELATELLSCGATVSVVVLSRKGGLMPELAKRRIKVLDDRADLSFKTAMKADLVIAGSAVCTSWIDQYITRFPAGGSQIVWWIMENRREYFDRSKIV LDRVKMVVFLSESQSRQWLTWCEGESIKLRSPPAVVDLSVNDELAFVAGIPCSLNSPSSSPEEMLEKKQLLRNSVRGEMGLNDNDMLVMSLSSINPGKGQ LLLLESAKMLAESDDSLLNLADKHHLRSLLQDQQHRTGGVAQESVIKVLVGSVGSKSNKIPYVKEILGFVSRHSNLSKTVLWTPSTTRVASLYSAADVYV INSQGIGETFGRVTIEAMAFGLPVVGTDAGGTKEIVEQNVTGLLHPVGRQGIRVLAENLRYLMKNREVRKGMGKKGKEKVERKYLKNHMYRKFGELLYKC MQIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	0	1
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	6.6	0.7971
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	6.6	0.7629
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	6.9	0.7860
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	7.6	0.8085
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	11.3	0.7865
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	12.1	0.7834
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	13.4	0.7716
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	13.6	0.7862
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10012139 [exp]	13.6	0.6869
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	13.6	0.7243

Compare expression of checked genes

Lus10037523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.