Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52360 1043 / 0 Coatomer, beta' subunit (.1.2) AT1G79990 1036 / 0 structural molecules (.1.2.3.4.5) AT3G15980 1033 / 0 Coatomer, beta' subunit (.1.2.3.4.5) AT2G21390 79 / 5e-15 Coatomer, alpha subunit (.1) AT1G62020 79 / 7e-15 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011467 [exp] 1234 / 0 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10033092 [exp] 924 / 0 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10035883 [exp] 86 / 4e-17 AT1G62020 1288 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 84 / 3e-16 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 83 / 6e-16 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 79 / 5e-15 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 79 / 6e-15 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 77 / 2e-14 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10002324 [exp] 53 / 3e-07 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056300 [exp] 1113 / 0 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 1103 / 0 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.012G074800 [exp] 81 / 1e-15 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 78 / 2e-14 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.006G250200 [exp] 50 / 2e-06 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF04053 [flax] [poplar] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Lus10037524 pacid=23167244 polypeptide=Lus10037524 locus=Lus10037524.g ID=Lus10037524.BGIv1.0 annot-version=v1.0 ATGGAGCTGGATTCAAGATTGGAGAACACATTGAATTATGGTCTTGAAAGAGTTTGGGCTATCGGCTACATTAAAGGTTCACGAAGGATTGTAATTGGCT ACGATGAGGGAACCATTATGGTCAAAATTGGTCGAGAAGAACCTGTGGCCAGTATGGACAACAGTGGAAAGATAATTTGGGCCAAGCACAATGAAATTCA GACTGTAAATATTAAGAGCGTGGGCGCTGATTTTGAGGTTACTGATGGAGAGCGATTACCTCTGGCAGTCAAGGAGTTAGGAACATGTGATCTGTACCCA CAAAGCTTAAAGCACAATCCCAATGGCAGATTTGTTGTTGTTTGTGGAGATGGCGAGTACATTATATATACGGCCTTAGCATGGAGAAACAGATCGTTTG GTTCTGCCTTGGAATTCGTTTGGTCGTCAGAAGGAGAATATGCTGTAAGAGAAAGTACATCAAAGATTAAGATCTTCAGTAAAAATTTCCAGGAAAAGAA GAGCGTGAGGCCAACCTTTTCAGCTGAGCGAATTTTTGGAGGGACTCTATTAGCTATGTGCGGAAATGATTTCATTTGTTTCTATGACTGGGCTGAATGC AGGCTAATTAGGAGAATCGATGTCACTGTTAAAAATCTTTATTGGGCTGACAGTGGTGATCTAGTGACAGTTGCAAGTAACTCTTCATTTTACATCCTGA AATACAATCGTGATGTCGTTTCATCCTATCTAGAAAGCGGAAGAGCTGTGGATGAGGAAGGTGTTGAAGAAGCCTTTGAACTTCTCCATGAGACCAACGA GCGTGTACGTACTGGATTGTGGGTGGGCGATTGTTTCATCTACAATAACTCCTCATGGAGGCTTAATTATTGTGTTGGGGGAGAGGTGACCACCATGTAT CATTTGGACCGCCCTATGTACTTGTTAGGGTATCTTGCTAATCAAAGTCGCGTGTATCTGATTGACAAAGAATTCAATGTTGTGGGTTACACTTTACTTC TCAGCTTGATTGAGTACAAGACTCTTGTTATGCGAGGCGACATAGAAAGAGCCAATGAGATCTTACCATCAATTCCAAAAGAACAGTACAACAGTGTTGC ACGTTTCTTGGAATCCCGCGGTATGGTGGAGAATGCTATCGATGTAGCTACTGACCCTGATTACAGATTTGAGTTGGCCATACAACTTGGTAGATTAGAG GTTGCAAAGGAAATTGCTGCTGAGGTGCAGAGTGAGTTGAAGTGGAAGCAGTTGGGAGAATTGGCCATGTCTAATGGAAAGCTGGAGATGGCTGAATCGT GCATGAATCGTGCAATGGACTTGAGTGGATTATTGCTGCTCTATTCTTCTCTTGGAGATGCTGACGGAATTTCGAAACTTGCATCCCTAGCAAAGGAGCA GGGAAAAAAGAATGTCGCTTTCTTGTGCTTATTCATGTTGGGTAAATTGGAAGATAACCGGATACCAGAGGCTGCTTTAATGGCTCGCTCTTATCTCCCG AGCAAGGTTTCAGAGATTGTTGCTATTTGGAGAAAAGATCTCAGTAAAGTCAACCCAAAAGCTGCAGAATCCTTGGCAGATCCGGAGGAGTATCCAAACA TGTTCGAGGACTGGCAAGTTGCTTTGTCTGTTGAATCGAAATTTGGCGACATACGGGGTGTTTATGCTCCAGCAGAAGACTACATAAACCATGCTGATAA ACCTCACCTAACGCTTGTGGAGGCCTTTAGAAACATGCATATCGAGGAGGAGTCTCTCGAGAATGGAGACTACGAGCAGGAGGAGGCTGTAGAAGAGCAG AGCGGAGAAGAACAGAACGTCGAGGAACAAACTGGAGAAGGAAGCCAAGAAGAAGCGATCGTGGTCGATGCTGATTCCAACGATGGCGGAGTACTTGTCA ACGGGAATGAGGCCGAGGAACAGTGGGGTACGAATAATGAAGGAAACCACCCATCAGCCTAA
AA sequence Show only first row Show all	>Lus10037524 pacid=23167244 polypeptide=Lus10037524 locus=Lus10037524.g ID=Lus10037524.BGIv1.0 annot-version=v1.0 MELDSRLENTLNYGLERVWAIGYIKGSRRIVIGYDEGTIMVKIGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADFEVTDGERLPLAVKELGTCDLYP QSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAVRESTSKIKIFSKNFQEKKSVRPTFSAERIFGGTLLAMCGNDFICFYDWAEC RLIRRIDVTVKNLYWADSGDLVTVASNSSFYILKYNRDVVSSYLESGRAVDEEGVEEAFELLHETNERVRTGLWVGDCFIYNNSSWRLNYCVGGEVTTMY HLDRPMYLLGYLANQSRVYLIDKEFNVVGYTLLLSLIEYKTLVMRGDIERANEILPSIPKEQYNSVARFLESRGMVENAIDVATDPDYRFELAIQLGRLE VAKEIAAEVQSELKWKQLGELAMSNGKLEMAESCMNRAMDLSGLLLLYSSLGDADGISKLASLAKEQGKKNVAFLCLFMLGKLEDNRIPEAALMARSYLP SKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNMFEDWQVALSVESKFGDIRGVYAPAEDYINHADKPHLTLVEAFRNMHIEEESLENGDYEQEEAVEEQ SGEEQNVEEQTGEGSQEEAIVVDADSNDGGVLVNGNEAEEQWGTNNEGNHPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037524 [exp]	0	1
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	1.0	0.9706
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	1.4	0.9617
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	2.0	0.9395
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	2.4	0.9465
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10016218 [exp]	4.2	0.9332
AT3G12110		ACT11	actin-11 (.1)		Lus10016558 [exp]	6.2	0.9135
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	7.1	0.9386
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	7.4	0.9172
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10029902 [exp]	7.5	0.9239
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	9.8	0.9238

Compare expression of checked genes

Lus10037524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.