Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52360 493 / 1e-168 Coatomer, beta' subunit (.1.2) AT3G15980 488 / 6e-167 Coatomer, beta' subunit (.1.2.3.4.5) AT1G79990 485 / 1e-165 structural molecules (.1.2.3.4.5) AT2G21390 161 / 6e-44 Coatomer, alpha subunit (.1) AT1G62020 159 / 3e-43 Coatomer, alpha subunit (.1) AT3G49660 93 / 3e-21 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 90 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 87 / 1e-18 TAF5 TBP-associated factor 5 (.1) AT1G71840 84 / 5e-18 transducin family protein / WD-40 repeat family protein (.1) AT1G61210 82 / 5e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033092 [exp] 458 / 7e-155 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 407 / 2e-135 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 326 / 2e-111 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 317 / 2e-107 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10011454 [exp] 157 / 2e-42 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 155 / 4e-42 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 154 / 2e-41 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 154 / 2e-41 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 153 / 3e-41 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056300 [exp] 497 / 2e-170 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 496 / 6e-170 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 379 / 6e-131 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.015G069700 [exp] 157 / 2e-42 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 157 / 2e-42 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.007G009500 [exp] 90 / 2e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 89 / 7e-20 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 84 / 4e-18 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.005G148500 [exp] 83 / 1e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 82 / 6e-17 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037525 pacid=23167105 polypeptide=Lus10037525 locus=Lus10037525.g ID=Lus10037525.BGIv1.0 annot-version=v1.0 ATGAGTGGTGGAGGTCGAGATCTGGGGAGAGGAGTGAGTGATTTCTATGTTTGGATGCTGAGAGAGTGGAAAGGAAGCGGTTTCGTTTTCTTAATTAGAG TCTGTTGCATTGGATCGCAAGCTTTCTTTGATTTGAAGCTAATGCGTGTTTTTCTCTTTTCATTTTCTTCTTTCCTTTTGGACAGCCTCTCAGACTGGAA ATCAAGGAAACTTGCTCAAAGATCGGAGAGAGTAAAGTCTGCGGATCTTCATCCTACAGAGCCATGGATCTTAGTGAGTCTGTATTCAGGGACTGTGTGT ATCTGGAACTACCAGTCGCAGACTATGGCGAAGTCCTTTGAAGTGACTGACTTACCAGTTAGGTCAGCCAAGTTCGTGCCAAGAAAGCAATGGGTTGTTG CTGGAGCGGACGACATGTTTATTCGGGTGTACAATTATAACACAATGGACAAGGTCAAAGTCTTTGAGGCACATACAGATTATATTAGGTGTGTGGCTGT GCATCCCACCCTTCCATATGTCTTGTCATCATCTGATGATATGCTCATAAAACTATGGGACTGGGAGAAAGGCTGGTTGTGCACTCAGATATTTGAGGGA CATTCCCATTATGTAATGCAAGTGACCTTTAACCCTAAAGACACAAACACGTTTGCCAGTGCATCTCTTGATCGAACCATAAAGATATGGAATCTTGGAT CTCCAGACCCAAACTTTACCCTGGATGCTCATCAGAAAGGGGTAAACTGCGTTGATTACTTCACAGGTGGTGATAAACCTTATCTGATCACTGGCTCTGA TGATCACACTGCTAAGGTGTGGGACTATCAAACCAAAAGTTGTGTCCAGACTTTGGAAGGGCACACCCATAATGTCTCTGCTGTATGTTTCCACCCTGAA CTGCCTATAATCATCACACCCACGCCTATACACACCCCGGTTTGGGGGGATGGCACCGCCCGCATATGGCATTCTACAACCTATAGAAATCCAGAACTCT AA
AA sequence Show only first row Show all	>Lus10037525 pacid=23167105 polypeptide=Lus10037525 locus=Lus10037525.g ID=Lus10037525.BGIv1.0 annot-version=v1.0 MSGGGRDLGRGVSDFYVWMLREWKGSGFVFLIRVCCIGSQAFFDLKLMRVFLFSFSSFLLDSLSDWKSRKLAQRSERVKSADLHPTEPWILVSLYSGTVC IWNYQSQTMAKSFEVTDLPVRSAKFVPRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEG HSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE LPIIITPTPIHTPVWGDGTARIWHSTTYRNPEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	0	1
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	1.4	0.9652
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	1.7	0.9695
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	3.0	0.9509
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	3.3	0.9500
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	4.0	0.9593
AT1G19835			Plant protein of unknown funct...		Lus10034509 [exp]	4.7	0.9349
AT3G60920			unknown protein		Lus10009306 [exp]	5.2	0.9606
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10015105 [exp]	6.0	0.9470
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	6.3	0.9578
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10016218 [exp]	6.3	0.9373

Compare expression of checked genes

Lus10037525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.