Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02010 599 / 0 Protein kinase superfamily protein (.1) AT2G20300 335 / 2e-104 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 326 / 4e-98 Protein kinase superfamily protein (.1) AT5G38560 281 / 1e-84 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G20650 270 / 5e-84 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G58690 270 / 9e-84 Protein kinase superfamily protein (.1) AT3G20530 268 / 3e-83 Protein kinase superfamily protein (.1) AT1G76370 268 / 3e-83 Protein kinase superfamily protein (.1) AT5G02800 266 / 9e-83 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G28690 266 / 2e-82 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011466 [exp] 678 / 0 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011917 [exp] 337 / 4e-105 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 333 / 8e-104 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10027635 [exp] 340 / 4e-102 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011933 [exp] 331 / 8e-99 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 281 / 2e-87 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040050 [exp] 273 / 4e-85 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10036499 [exp] 271 / 5e-84 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019621 [exp] 269 / 1e-83 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119100 [exp] 608 / 0 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 597 / 0 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 343 / 3e-107 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 341 / 2e-106 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 332 / 6e-101 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 326 / 4e-98 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 319 / 4e-97 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 283 / 6e-88 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 278 / 5e-87 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 279 / 2e-86 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037526 pacid=23167029 polypeptide=Lus10037526 locus=Lus10037526.g ID=Lus10037526.BGIv1.0 annot-version=v1.0 ATGTCGGTGGCTCCTGCAGCTGCTTCTTCAGTCAATGTCACTGCAGGACCACCGAGAAGGCTGTGGCATTTATGGAGGATTCTATTTGTAATCTTTGGTT CAGTTATTCTCATCACTGAGACGGTCGATTCAGCTGGCGTTAGTGTGCGGGAGCTTCATAAATCTCACAGGAAACATTTCTCGCCGCTTGCTTCACCGGC ATTTGTGGTTGCTCCAGCTCAGCCTCCTGACTATGATCCATTGATAACTTCTGGTCATCCACCAACGAGTTCGAGCTTGTCGAAACCTTCGATGAAGAAG ACACCGGGTGTTGGGTTAGTTGCTCTTGCCCCAACGCAGCCCCACGCTAGCGACAACAGTTCGGGATTAGCTCAGCCTCCTTTATCTCCAGATGTCCCTG ATTGTTGTGGACCAGAGCTAGTGGTGAAGAGAGGGGGTCATGGCTGCCACTGTGTGTATCCTATAAAGCTTGACCTTCTCCTGTCGAATGTTTCCCAAAA TCATAATTGGGATTTGTTCCTTCAGGAGTTGGCTTCTGAGCTGGGGTTATTGGTTTCTCAAATTGAGCTGAGAAACTTCTATTTTCTCACCCTATCGAGA TTAAACATTTCGATGGATATTATTCCTCACTCCGGTGACAGCTTTCCTGCCAGTGATGCATACAAAATAAACTCTTCCCTTTCCTTGCATCAAGTCCGCT TCGACCCTAGCTTTGTTGGTGACTACAAACTCCTTAATCTTACATGGTTTGAACTGCCACCGCCTAGCCCAGTCGTGATTGTCACCATTATATGTACGCT TGTGGTTTGCTCCCGCTTGTCACGTAGAAGGAGAACTCAACCACCATCTGAAGAACCTGAGAAACAGAGGACTACATATGCAGTTCCTGTTGTGGGATCC ATCCCACATCCTTCAAGTACCCGTTTCCTATCTTATGAAGAACTCAGGGAAGCAACCAGTAACTTCTCGACTGCTAGCATACTTGGAGAAGGTGGGTTTG GTAAGGTTTTCAAAGGTGTCCTTAGTGATGGCACAGCTGTTGCGATCAAGAGGCTCACCTGTGGAGGCCAACAAGGGGATAAAGAGTTCTTAGTTGAGGT TGATATGCTGAGTAGATTGCATCATCGCAATCTTGTCAAACTCGTCGGCTACTATAGTAGTCGTGAAACTTCACAGAACCTCCTTTGTTATGAGCTTGTT CCCAATGGAAGCTTAGAGGAGTGGCTCCATGGTAATTCACTCTCGCTAAACCCCGGTGTGCTTTTGTTATGTAATTTCACGGTATACAAATCTCATGTTG CCCATGGCTTTTCCTCAGGTCCTCTAGGTGCTAATTCTCCTCTTCTTTGGGACACCAGAATGAAGATCGCTTTGGATGCCGCGAGAGGACTCGCTTACCT ACACGAGGACTCGCAGCCGAGTGTTATCCATAGGGATTTCAAGGCATCCAACATCCTTCTGGAGAACAATTTCCTTGCTAAAGTCGCGGATTTCGGACTT GCGAAACAGGCACCAGAAGGCAGAGTGAATTATCTATCTACACGAGTGATGGGAACATTCGGATATGTTGCGCCCGAGTATGCCATGACCGGACATTTAC TGGTAAAGAGTGATGTATATAGCTATGGAGTTGTGCTGCTCGAGTTGCTTACTGGGAGGAAGCCTGTGGATATGTCGCAACCATCTGGACAGGAGAACCT TGTTACTTGGACAAGACCCATTCTCAGAGACAAGGACAGGCTAGACGAGCTGGCGGATCCGAGGCTAGTCGGGAAGTACCCGAAGGAAGACTTTGTGCGA GTCTGCACGATAGCAGCAGCCTGCGTAGCCCCCGAGGCTAGCCAGCGGCCCACCATGGGAGAAGTGGTGCAGTCGCTGAAAATGGTCCAGCGGGTGACCG AGTACCAAGACGCTGCTGCCGCAGCATCGAGTGCCAGGCCTACGAACACGAGACAGTCGTGCACCACCTTCGACTCGGACGGGACATCTTCGATCTTCTC GTCGGGTCCTTTCTCCGGGATGAGCAACTTCGACAACGAGCGGACTGCAGCCTTCTCGGAGGATCTCCACGAAGGGAGGTGA
AA sequence Show only first row Show all	>Lus10037526 pacid=23167029 polypeptide=Lus10037526 locus=Lus10037526.g ID=Lus10037526.BGIv1.0 annot-version=v1.0 MSVAPAAASSVNVTAGPPRRLWHLWRILFVIFGSVILITETVDSAGVSVRELHKSHRKHFSPLASPAFVVAPAQPPDYDPLITSGHPPTSSSLSKPSMKK TPGVGLVALAPTQPHASDNSSGLAQPPLSPDVPDCCGPELVVKRGGHGCHCVYPIKLDLLLSNVSQNHNWDLFLQELASELGLLVSQIELRNFYFLTLSR LNISMDIIPHSGDSFPASDAYKINSSLSLHQVRFDPSFVGDYKLLNLTWFELPPPSPVVIVTIICTLVVCSRLSRRRRTQPPSEEPEKQRTTYAVPVVGS IPHPSSTRFLSYEELREATSNFSTASILGEGGFGKVFKGVLSDGTAVAIKRLTCGGQQGDKEFLVEVDMLSRLHHRNLVKLVGYYSSRETSQNLLCYELV PNGSLEEWLHGNSLSLNPGVLLLCNFTVYKSHVAHGFSSGPLGANSPLLWDTRMKIALDAARGLAYLHEDSQPSVIHRDFKASNILLENNFLAKVADFGL AKQAPEGRVNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWTRPILRDKDRLDELADPRLVGKYPKEDFVR VCTIAAACVAPEASQRPTMGEVVQSLKMVQRVTEYQDAAAAASSARPTNTRQSCTTFDSDGTSSIFSSGPFSGMSNFDNERTAAFSEDLHEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	0	1
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	1.0	0.9252
AT5G51300			splicing factor-related (.1.2....		Lus10038932 [exp]	1.4	0.9028
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	3.9	0.9025
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	5.3	0.8985
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006057 [exp]	5.9	0.8646
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	6.7	0.8789
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	7.3	0.8975
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	8.8	0.9014
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	8.9	0.8754
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10036545 [exp]	10.4	0.8222

Compare expression of checked genes

Lus10037526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.