Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47330 1011 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 431 / 3e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G63120 420 / 7e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 402 / 6e-132 DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 387 / 1e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G14610 323 / 3e-100 DEAD box RNA helicase family protein (.1.2) AT3G01540 320 / 5e-99 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 327 / 9e-98 DEAD box RNA helicase family protein (.1) AT3G58510 312 / 3e-96 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT2G33730 308 / 3e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011466 [exp] 1326 / 0 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035327 [exp] 421 / 2e-133 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019484 [exp] 405 / 1e-131 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015627 [exp] 400 / 3e-131 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043334 [exp] 404 / 5e-131 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037646 [exp] 399 / 8e-131 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10032133 [exp] 333 / 1e-103 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 332 / 3e-103 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 327 / 3e-97 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G194600 [exp] 1066 / 0 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G257400 [exp] 432 / 6e-136 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G038300 [exp] 404 / 1e-132 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G003600 [exp] 418 / 8e-131 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 392 / 5e-127 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 391 / 4e-126 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G347100 [exp] 333 / 4e-102 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 331 / 1e-101 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 338 / 3e-101 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.012G045800 [exp] 314 / 7e-96 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10037527 pacid=23167076 polypeptide=Lus10037527 locus=Lus10037527.g ID=Lus10037527.BGIv1.0 annot-version=v1.0 ATGACCAAGAGAAAATTCGGATTCGAAGGATTCGGCATCAACCGTCAAACCAGCTACAACTTCGAGCGATCTCAAGCTCCGCAGCGGCTCTATGTCCCAC CTTCATCTCGCCACAGCCATGACAACTACGAAGATACGGACATCGACCATATCGATTACGACGATACTAAGGAGACCACAAGCGATGGCGAGCCTGACAT CAGCAACAACAACAATAGCAACAGCAATACCGGCGGCGTTGAGGATGACGAAGTTGATCCACTAGACGCGTTCATGGAGGGGATACACGAAGAGATGAAA GCAGCGCCTCCGCCGAAGGCTAAGGATAAAGTGGACAAGTATCGCGATGACGAGGAGGATGATCCCATGGAGAGCTTCTTGAGTGCGAAGAAAGATGTAG GGTTGACGTTGGCGGCCGATGCTCTCAACGCTGGATACAATTCCGACGAGGAGGTTTACGCAGCTGCAAAAGCTGTGGATGCTGGATTGCTGGATTATGA TTCGGATGATAATCCGGTGGTGGTTGATAAGAAGAAGATTGAGCCCCTTACCGCTTTAGACCATAGTTCCATTGATTATGAACCTTTCAACAAGGATTTT TACGAGGAGAAGGAGTCCATAGCAGGGATGAGCGGGCAGGATGTGGCTGAGTACAGGAACACTCTGGCTATTCGTGTTTCGGGCTTTGATGTTCCAAGGC CGGTTAAAACGTTTGAAGATTGTGGATTTTCTACACAACTGATGGGCGCTATTGCTAAACAAGGTTATGAAAAGCCAACCCCCATACAATGTCAAGCATT GCCTATTGTGCTCTCTGGGAGAGACATCATTGGTATAGCAAAAACAGGCTCTGGCAAGACTGCTGCTTTTATACTTCCCATGATTGTACATATCATGGAC CAACCTGAACTTCAGAAAGAAGAAGGGCCAATTGGAGTTATTTGTGCACCTACTAGGGAGTTAGCTCATCAAATATACTTGGAGGCAAAGAAATTTGCTA AACCGTATGGGATCCGGGTCTCTGCTGTCTATGGTGGAATGTCGAAGCTTGAGCAGTTTAAAGAACTGAAAGCTGGTTGTGAAATGGTTGTTGCTACTCC TGGTAGATTGATAGATATGATAAAAATGAAAGCAGTGAATATGTTGAGAGCAACTTGCTTGGTACTTGATGAGGCAGATAGGATGTTTGACCTAGGGTTT GAGCCTCAAATAAGGTCTATTGTTGGCCAGATTAGGCCAGATCGCCAAACTTTACTCTTCTCGGCTACCATGCCGTTCAAAGTTGAGAAGTTAGCCAGGG AGATTCTTTCTGATCCCGTTAGAGTGATCGTGGGAGAGGTGGGAATGGCCAATGAAGATATTACTCAAGTAGTCCAAGTGATTCCCTCTGATGCAGAGAA GCTTCCCTGGCTTCTTGAAAAGCTACCCCCGATGATTGATGATGGAGATGTCCTAGTTTTTGCTTCGAAAAAGGCCACTGTTGATGAGATTGAATCGCAG TTGGTCAAGAAGGAGTTCAAAGTTGCAGCTCTTCATGGCGACAAAGATCAGTCTTCAAGAATGGAGATCTTGCAGAAATTCAAATCCGGGATCTACCATG TTCTTATTGCAACTGATGTTGCTGCTCGTGGATTAGATATTAAATCAATCAAGTCGGTTGTGAACTTTGATGTTGCAAAAGACATGGACATGCATGTCCA TCGTGTTGGCAGGACTGGTCGTGCTGGCGATAAAGATGGGATTGCTTATACTCTTATAACCCACAAGGAGGCACGGTTTGCTGGGGAACTGGTTAACAGT CTGGTTGCTGCTGGTCAAAATGTCTCTGCAGAACTCATGGATCTTGCTATGAAGGATGGAAGATTCAGGTCCAAACGTGACGCAAGAAAAGGAGGTGGTA AGAAAGGCAAAGGCAGGGGTGGTAGTGGTCGAGGAGTTCGTGGCGTGGATTTCGGTCTTGGGATTGGCTACAATTCTGAATCCACTGGCACCTCACCCCA TGACAATAGACCCAGTAAATCTGCAGGTTTCAGCTCAGTCCGGACAGGGATGATGGGACAGTTCAAGAACAATTTTGTTTCTGCTTCGTCGAATTCTCAG TCTGCTGGATTTAGTAACAATGGCTCGGGTGCTGCTGCTCCCAGCAAAAGGCCGGCATTACGAGGATTTGTGTCCGGTGGTTCAATAGGAGGCGATGCAA ATAGAGTCCAGCCGCCTACCAGTACACTATCTGGGTTCGTCTCAGCCGGTTCAATAACTGGAGATGCAAACAGAACCTCTCAGAACCCCTCCGGAAATAC CAACCAGAAAACACCAGAGAGTTCCGCTGGCCGAGAACGGCGGAGACGCTCCGGCTGGGACCATTGA
AA sequence Show only first row Show all	>Lus10037527 pacid=23167076 polypeptide=Lus10037527 locus=Lus10037527.g ID=Lus10037527.BGIv1.0 annot-version=v1.0 MTKRKFGFEGFGINRQTSYNFERSQAPQRLYVPPSSRHSHDNYEDTDIDHIDYDDTKETTSDGEPDISNNNNSNSNTGGVEDDEVDPLDAFMEGIHEEMK AAPPPKAKDKVDKYRDDEEDDPMESFLSAKKDVGLTLAADALNAGYNSDEEVYAAAKAVDAGLLDYDSDDNPVVVDKKKIEPLTALDHSSIDYEPFNKDF YEEKESIAGMSGQDVAEYRNTLAIRVSGFDVPRPVKTFEDCGFSTQLMGAIAKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFILPMIVHIMD QPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGIRVSAVYGGMSKLEQFKELKAGCEMVVATPGRLIDMIKMKAVNMLRATCLVLDEADRMFDLGF EPQIRSIVGQIRPDRQTLLFSATMPFKVEKLAREILSDPVRVIVGEVGMANEDITQVVQVIPSDAEKLPWLLEKLPPMIDDGDVLVFASKKATVDEIESQ LVKKEFKVAALHGDKDQSSRMEILQKFKSGIYHVLIATDVAARGLDIKSIKSVVNFDVAKDMDMHVHRVGRTGRAGDKDGIAYTLITHKEARFAGELVNS LVAAGQNVSAELMDLAMKDGRFRSKRDARKGGGKKGKGRGGSGRGVRGVDFGLGIGYNSESTGTSPHDNRPSKSAGFSSVRTGMMGQFKNNFVSASSNSQ SAGFSNNGSGAAAPSKRPALRGFVSGGSIGGDANRVQPPTSTLSGFVSAGSITGDANRTSQNPSGNTNQKTPESSAGRERRRRSGWDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	0	1
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	2.0	0.9379
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	6.0	0.9235
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	6.3	0.9294
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	6.8	0.8877
AT1G48950			C3HC zinc finger-like (.1)		Lus10027238 [exp]	7.7	0.8602
AT2G24530			unknown protein		Lus10026942 [exp]	8.1	0.8889
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	8.4	0.9125
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	8.9	0.8920
AT1G36990			unknown protein		Lus10003744 [exp]	9.5	0.8472
AT3G22270			Topoisomerase II-associated pr...		Lus10027297 [exp]	9.6	0.8699

Compare expression of checked genes

Lus10037527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.