Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58370 1031 / 0 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G08160 941 / 0 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT1G10050 891 / 0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G38650 236 / 2e-66 Glycosyl hydrolase family 10 protein (.1) AT4G33830 218 / 4e-60 Glycosyl hydrolase family 10 protein (.1) AT4G38300 202 / 4e-58 glycosyl hydrolase family 10 protein (.1) AT4G33840 211 / 7e-58 Glycosyl hydrolase family 10 protein (.1) AT4G33860 208 / 6e-57 Glycosyl hydrolase family 10 protein (.1) AT4G33820 199 / 1e-53 Glycosyl hydrolase superfamily protein (.1) AT4G33810 197 / 2e-53 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007243 [exp] 1268 / 0 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 1253 / 0 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10011465 [exp] 1172 / 0 AT1G10050 807 / 0.0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007242 [exp] 939 / 0 AT1G58370 1016 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 922 / 0 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10025054 [exp] 253 / 2e-72 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 213 / 2e-58 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 204 / 2e-55 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 203 / 3e-55 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113132 [exp] 1117 / 0 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 988 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.004G173300 [exp] 233 / 2e-65 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 223 / 7e-62 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 211 / 8e-58 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087900 [exp] 201 / 1e-54 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 199 / 4e-54 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.001G179500 [exp] 100 / 7e-24 AT1G79990 222 / 1e-75 structural molecules (.1.2.3.4.5) Potri.003G056100 [exp] 98 / 2e-23 AT1G79990 223 / 5e-76 structural molecules (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09801 [flax] [poplar] SYS1 Integral membrane protein S linking to the trans Golgi network CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10037528 pacid=23167376 polypeptide=Lus10037528 locus=Lus10037528.g ID=Lus10037528.BGIv1.0 annot-version=v1.0 ATGTTCTATGGTTCAACAGTGTGGGATCCATTGCTTATAGTCGCTCAGATCGTGTGCCTTCAATGCTTCTACTACGTTACCTTGGGATTGTCTCTCTCCG TTCTTGTAGGCACTCGCGTTTCTCGCCTCAGTCTCGTCTACTTCTTTGATTTCGTCGCCGTCACCTCCTCGTCCGCCACCGGTTGGTGCGTCATCGCGTC CTTCTTCCTCAGCTCACTCGCCGGAGCTGCGTATATGCTTTATTTGATTGAGAGGGCAAAGAAGTGTTTAGACTTTTCAACTATGGATGAGAACATGGGC AATTCAAACAGCAGTACCCATTTTTCGAAAGATCTAGTCATCAACAACAGCATGACAAATATCATCATCAACCATGACTTTTCCGAAGGGCTCCAATCCT GGCATCCAAATTCTTGTGATGGATTTGTGGTTTCGTCAAATTCAGACCGCCTAGAACTTTTAGCAGGACTAGTAGGTGGTTATGCAGTTGTGACAAACCG GAAACAATGCTGGCAAGGAATTGAGCAAGACATCACTGGCAGGGTTTCTCCAGGATTAACTCACACGGTTTCTGCCGTTGTTGGAGTATCAGGACATATT CAGGGACCTGCTGAGGTCATTGCTACTTTAAAACTTGAACAGCAAGGATCAGGAACCCAATACTTGCGTGTTGGAAAAGCTACTGTGTCGAAGGGGCAGC TCGAGATGCTGGAAGGAAATTTCTGTTTGCCAACTATTCCTGATCGGGTAGTCTTGTACTTTGAAGGACCTTCTGCTGGAGCTGATATACTAATAGCATC AGTGAATGTTTGCTCTTCTGGACCTGTAAACAATGATGTTGCGGACGAAAAGAATAGAGATCTAGGCAACCGTGTGTCCAATATTGTACTAAACAACAAC TTTTCTCAAGGACTGGACTCGTGGCACACAAACCACTGTGACGGCTATGTGGTCAAGATAGACTCGAGTCACCCAGGACGCTTAGCCAATATAGCTGGAA GTTATGCAGTTGTCTCGAATAGAAAAGAAAGCTGGCAGGGCCTGGAACAAGATATCACAAGCAAGGTTTCTCCTGGCTTAACATACTTTGTTTCTGCCTT TGTTGGAGTGTCTGGGCAGATTCGAGGATCAGCTGAGGAGGTTAATGGAACTTTAAAATTGGAACACCAAGGCTCAGCAACGAACTATCTGCCTGTTGGA AAAACTTCTGTGTGCTATGGGAAGTGGAAAAAGTTGGAAGGCGCATTCTCTTTGCCAACTATGCCTGATCGTGTCGTCTTTTATGTCGAGGGGGCATCTC CCGGAGCCAACCTCTTAATAAAGTCTGTATTCATTGGCGATGCTAATTCCAGCAAGTCAATCGGTGCGAGGATTAGTCATGGGAGTTCTGAAAATGAAGA TGAGAACCTCATATTAAATCACAACTTTGAGGATGGCTTGAACAATTGGTCTGGTAGAGGGTGCAAGATCCTAGTACACAATTCGACAGCTGACAGGAAA ATTGTACACGAGTCCAGCAAAGTCATTGTAGTAGCAACAGGACGTACGGCGAGCTGGCACGGAATTCAACAGGAAATAACCGGGAGAGTACAGAGGAAGC TTGTGTATGAAGTCACTGCTATAGTGCGGATTTATGGCAACAATGTCACTTGTGCTGATGTACAAGCTACTTTGTGGGTGCAAAATCCGGATAACCGAGA AGAATATATCGGCATTGCAAAGTTGCAGGCAAAAGACTCAGATTGGGTAAAGCTGCAGGGGAAGTTCCTTTTGAATGGCTCTCCTAAGAAAATAGTTGTG TACCTGGAAGGTCCACCTCCAGGGACTGATGTTCTCGTAAATAGCTTCACTCTGAAACGTGCAAAGAAAGTCCTTCCCTCACCTCTTCGAATCGAGCACC CTGCATTTGGAGTGAACATACTTCATAACAGCAATCTGAGTGCTGGAACCAATGGTTGGTTTCCTCTTGGCAATTGTTTTCTAAGTGTTGCAACTGGTTC ACCTCATGTAATTGCTCCGATGGCAAGAGAATCTCTTGGAGTTCACGAGCCTCTAAGCGGCCGGTGCATAGCTGTCACGAATAGAACACAAACTTGGATG GGACCTGCACAAACAATCACCGAGAAAGTGAAGCTGCATGGTGCGAGGATTAGTCATGGGAGTTCTGAAAATGAAGATGAGAACCTCATATTAAATCACA ACTTTGAGGATGGCTTGAACAATTGGTCTGGTAGAGGGTGCAAGATCCTAGTACACAATTCGACAGCTGACAGGAAAATTGTACACGAGTCCAGCAAAGT CATTGTAGTAGCAACAGGACGTACGGCGAGCTGGCACGGAATTCAACAGGAAATAACCGGGAGAGTACAGAGGAAGCTTGTGTATGAAGTCACTGCTATA GTGCGGATTTATGGCAACAATGTCACTTGTGCTGATGTACAAGCTACTTTGTGGGTGCAAAATCCGGATAACCGAGAAGAATATATCGGCATTGCAAAGT TGCAGGCAAAAGACTCAGATTGGGTAAAGCTGCAGGGGAAGTTCCTTTTGAATGGCTCTCCTAAGAAAATAGTTGTGTACCTGGAAGGTCCACCTCCAGG GACTGATGTTCTCGTAAATAGCTTCACTCTGAAACGTGCAAAGAAAGTCCTTCCCTCACCTCTTCGAATCGAGCACCCTGCATTTGGAGTGAACATACTT CATAACAGCAATCTGAGTGCTGGAACCAATGGTTGGTTTCCTCTTGGCAATTGTTTTCTAAGTGTTGCAACTGGTTCACCTCATGTAATTGCTCCGATGG CAAGAGAATCTCTTGGAGTTCACGAGCCTCTAAGCGGCCGGTGCATAGCTGTCACGAATAGAACACAAACTTGGATGGGACCTGCACAAACAATCACCGA GAAAGTGAAGCTGTTCTTGACATATCAGATAACTGCTTGGGTTAAGATTTGCCCTGGTGGTGCCAATGGACCTCAAAATGTGAATGTCGCACTCGGTGTA GACAATGAATGGGTAAATGGAGGACAAATTGAGATCAACGATGATCAATGGCATGAAATCGGTAGCTCTTTCAGAATAGAGAAGCAAGCATCCAAGATCA TGGTTTACATCCAAGGTCCTGCTGCGGGAACAGATTTCATGGTTGCTGGACTTCAAATTTTTGCTGTTGATCGAGCAGTGAGATTCAACCACTTGAAAAG GCTTACTGACAAGATTCGAAAACGCGATGTTACCTTGAAGCTCACAGGAGCAAATTCAAGTTGCTTGCGTGGTACATTGGTGAAAGTTCGACAAACTCAG AACAGTTTTCCATTGGGGACGTGCATAAGCCGCAGCAACATTGACAACGAAGACTTCGTAAATTTCTTTGTAAAGAATTTCAACTGGGCAGTGTTTGGGA ACGAGCTGAAATGGTCTTGGACGGAGTCGCAGCAGGGAAGCCTTAACTACAAGGATGCCGACGACATGTTGGACCTCTGCAAATGCCATAACATAGAAAT ACGAGGTCATTGCATCTTCTGGGACGTGGATGATACAGTCCAGCAATGGATCAAATCCTTGAACAAAGAAAACTTTATGAAAGCAGTGCAAAACCGTCTA ACCAATCTCCTCACCAGATACAAAGGCAGGTTCAAACATTACGACGTGAACAATGAGATGCTGCACGGGTCGTTCTTTCCAGACCGGCTAGGCGAAGAAA TCCGACCTTACATGTTCAAGACAGCTAATCAGCTTGATCCATCAGCAACCCTTTTCGTTAACGACTACCATGTCGAAGATGGACGTTGTGCCAGGTCAAC CCCTGCAAAGTACATCGAACACATTCTTAACTTGCAGGAGCAAGGCGCGCCGGTAGGAGGGATTGGAATTCAAGGACACATAGATAGTCCGGTCGGGCCG GTTGTTTGTTCAGCTCTTGACAAGCTCGGAATCCTAGGCCTTCCGATTTGGTTCACAGAGTTGGATGTGTCGTCAGTTAACGAGCATGTTCGAGCGGAGG ATTTGGAAGTCATGCTACGCGAAGCCTACGCGCATCCTTCGGTGGAAGGGATCGTGCTTTGGGGGTTCTGGGAGTTGTTTATGTGTCGAGAGAATTCACA CCTGGTTGATGCGGAAGGCGAGTTGAACGAAGCTGGGAGGAGATTCTTGGCTCTCAAGAAAGAGTGGATGTCTCGTGCTGACGGCTGCATCGGTGAGCAT GGTGAGTTTGGATTCAGAGGGTTTCATGGGACTTATACGGTGGAGATTGTTGGCCTCGAGAAAGTGGTTACTAAGACATTTGTAGTGGAAAAGGGTGATA CTCCTTTGCTCCTCTCCATTGATCTTTCAAACTCTTAA
AA sequence Show only first row Show all	>Lus10037528 pacid=23167376 polypeptide=Lus10037528 locus=Lus10037528.g ID=Lus10037528.BGIv1.0 annot-version=v1.0 MFYGSTVWDPLLIVAQIVCLQCFYYVTLGLSLSVLVGTRVSRLSLVYFFDFVAVTSSSATGWCVIASFFLSSLAGAAYMLYLIERAKKCLDFSTMDENMG NSNSSTHFSKDLVINNSMTNIIINHDFSEGLQSWHPNSCDGFVVSSNSDRLELLAGLVGGYAVVTNRKQCWQGIEQDITGRVSPGLTHTVSAVVGVSGHI QGPAEVIATLKLEQQGSGTQYLRVGKATVSKGQLEMLEGNFCLPTIPDRVVLYFEGPSAGADILIASVNVCSSGPVNNDVADEKNRDLGNRVSNIVLNNN FSQGLDSWHTNHCDGYVVKIDSSHPGRLANIAGSYAVVSNRKESWQGLEQDITSKVSPGLTYFVSAFVGVSGQIRGSAEEVNGTLKLEHQGSATNYLPVG KTSVCYGKWKKLEGAFSLPTMPDRVVFYVEGASPGANLLIKSVFIGDANSSKSIGARISHGSSENEDENLILNHNFEDGLNNWSGRGCKILVHNSTADRK IVHESSKVIVVATGRTASWHGIQQEITGRVQRKLVYEVTAIVRIYGNNVTCADVQATLWVQNPDNREEYIGIAKLQAKDSDWVKLQGKFLLNGSPKKIVV YLEGPPPGTDVLVNSFTLKRAKKVLPSPLRIEHPAFGVNILHNSNLSAGTNGWFPLGNCFLSVATGSPHVIAPMARESLGVHEPLSGRCIAVTNRTQTWM GPAQTITEKVKLHGARISHGSSENEDENLILNHNFEDGLNNWSGRGCKILVHNSTADRKIVHESSKVIVVATGRTASWHGIQQEITGRVQRKLVYEVTAI VRIYGNNVTCADVQATLWVQNPDNREEYIGIAKLQAKDSDWVKLQGKFLLNGSPKKIVVYLEGPPPGTDVLVNSFTLKRAKKVLPSPLRIEHPAFGVNIL HNSNLSAGTNGWFPLGNCFLSVATGSPHVIAPMARESLGVHEPLSGRCIAVTNRTQTWMGPAQTITEKVKLFLTYQITAWVKICPGGANGPQNVNVALGV DNEWVNGGQIEINDDQWHEIGSSFRIEKQASKIMVYIQGPAAGTDFMVAGLQIFAVDRAVRFNHLKRLTDKIRKRDVTLKLTGANSSCLRGTLVKVRQTQ NSFPLGTCISRSNIDNEDFVNFFVKNFNWAVFGNELKWSWTESQQGSLNYKDADDMLDLCKCHNIEIRGHCIFWDVDDTVQQWIKSLNKENFMKAVQNRL TNLLTRYKGRFKHYDVNNEMLHGSFFPDRLGEEIRPYMFKTANQLDPSATLFVNDYHVEDGRCARSTPAKYIEHILNLQEQGAPVGGIGIQGHIDSPVGP VVCSALDKLGILGLPIWFTELDVSSVNEHVRAEDLEVMLREAYAHPSVEGIVLWGFWELFMCRENSHLVDAEGELNEAGRRFLALKKEWMSRADGCIGEH GEFGFRGFHGTYTVEIVGLEKVVTKTFVVEKGDTPLLLSIDLSNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10037528 [exp]	0	1
AT1G31780			unknown protein		Lus10035691 [exp]	5.2	0.8132
AT3G49490			unknown protein		Lus10032925 [exp]	5.5	0.7833
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	7.9	0.7949
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	16.1	0.8044
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	34.4	0.7946
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032140 [exp]	35.0	0.7671
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	38.6	0.7632
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	41.5	0.7714
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	42.9	0.7490
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	42.9	0.7321

Compare expression of checked genes

Lus10037528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.