Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40430 183 / 6e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011462 [exp] 410 / 2e-142 AT2G40430 187 / 1e-55 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075700 [exp] 340 / 2e-114 AT2G40430 211 / 4e-64 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07767 [flax] [poplar] Nop53 Nop53 (60S ribosomal biogenesis)
Representative CDS sequence Show only first row Show all	>Lus10037530 pacid=23167374 polypeptide=Lus10037530 locus=Lus10037530.g ID=Lus10037530.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGTCGAAGAGTTCAAGGAAAGGCAAGAAAGCTTGGAGAGCTAACATAAGCACCGCCGACGTCGATGACTTCATCGAGAAATCAACCAAAG ACGCCCTCACCGGCGGTTCCCTCTCCGAAGTCTCCAACGAATCCCTTTTCTTCGTCGACAAAGAAAAAGATCTTACTGTGAGGAGGAAGATAGAGAAACA CAGGGAGAAAGTGCTTCACTGTGAGAGCGTTCTGCAGAAGAACCCGTTTGTTAAAGTAGTACCATCTTCAAAGGAGAATAAACCTATCAACGGCAAGAAG AAGAAGAAGAATATGAAAGACAAAAGTGAGGCTGCAGTGGAAAAAGATGATATTACTCAGGTAGTAAAACCTTCTACCATTCCTGCAGTGGAAGTTGAAC CTCCTGGATGCTCATACAATCCTGAATTAGAAGCTCATCAGGATTCCTTAGCACAAGCTGTTGCGGAAGAGATGCAGAAAGTCTACAAAAATGAGCTAGG TCCTCAGCCTGTCCCTTTAACTGTTCAGGGGGAAGCTATTGGGGAGGAAGAGATGTACTTTCTTGAGGTGGATAATGAGGATGATGAAGCAATTGAGGAG AATGAAGATAATGCTGAAGAAAAAAGGTCTGCTTATCTTGTTGACAGAGACGTAAGGCGACAACAATTACTCGAAAACTATGTGCTATCCACCAAATTTA TAACACGGAAACCTTCTCCTGGGCGCAGCTTACCGAAAATCCTTGAAGAAATTGCGAAAGAAGATCAAGAGAAGCAAAATCGACATACACGACGGACAGT AGCGAAGGAGGAAAGACTAAAGACGAGACCTCCACGACTCGGAAAGCACAAATTTGAGCCTGCTCCTACTCAAGTACTGTTGTCAGAAGAAATTACAGGA TCCCTTCGCAAGTTGAAGGGGTGTTGCACGCTTGCAACAGACAGGTTCAAGAGCCTAGAGAAGAGAGGATTGATCCCTCCATCATCCAACAAGAAGAGGA GGAGTCAACAAACTTGGAGGTATTTGCTCATGAATGACTGCCCCTTGACAGGTCTTAAGAGAGTTTTCAGAGATGTCTGGCCGACGACGACGAAGCAGCT GCCGACTGAGGGCGGCCATCAATCACGTCGGGGATTTTGGTTTCTTTTCCATTGTCTTTTAGGCAATTTTCATCCTGCGACCACAAGCATCATGGAACAT CATGTAGCAGACCTGACGTTGACAGAGAGCAATGAGGAGATGTTGTTGGAGGCACCCGAGAAAGACGGCGCTAGCTTAACGTCTGGGGCACAGGGGACAT GCCCAACTCCATAA
AA sequence Show only first row Show all	>Lus10037530 pacid=23167374 polypeptide=Lus10037530 locus=Lus10037530.g ID=Lus10037530.BGIv1.0 annot-version=v1.0 MGKKSKSSRKGKKAWRANISTADVDDFIEKSTKDALTGGSLSEVSNESLFFVDKEKDLTVRRKIEKHREKVLHCESVLQKNPFVKVVPSSKENKPINGKK KKKNMKDKSEAAVEKDDITQVVKPSTIPAVEVEPPGCSYNPELEAHQDSLAQAVAEEMQKVYKNELGPQPVPLTVQGEAIGEEEMYFLEVDNEDDEAIEE NEDNAEEKRSAYLVDRDVRRQQLLENYVLSTKFITRKPSPGRSLPKILEEIAKEDQEKQNRHTRRTVAKEERLKTRPPRLGKHKFEPAPTQVLLSEEITG SLRKLKGCCTLATDRFKSLEKRGLIPPSSNKKRRSQQTWRYLLMNDCPLTGLKRVFRDVWPTTTKQLPTEGGHQSRRGFWFLFHCLLGNFHPATTSIMEH HVADLTLTESNEEMLLEAPEKDGASLTSGAQGTCPTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40430			unknown protein		Lus10037530 [exp]	0	1
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	1.0	0.8929
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	2.0	0.8688
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	4.2	0.8732
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	4.5	0.8754
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	5.0	0.8649
AT4G12640			RNA recognition motif (RRM)-co...		Lus10016070 [exp]	6.2	0.8326
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	6.5	0.8641
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	6.7	0.8613
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	8.4	0.8569
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	8.7	0.8177

Compare expression of checked genes

Lus10037530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.