Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79950 997 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20720 265 / 1e-73 RAD3-like DNA-binding helicase protein (.1) AT1G20750 231 / 2e-62 RAD3-like DNA-binding helicase protein (.1) AT1G79890 216 / 3e-58 RAD3-like DNA-binding helicase protein (.1) AT1G03190 134 / 5e-32 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT2G05635 46 / 2e-05 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011460 [exp] 1820 / 0 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 293 / 2e-82 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 282 / 2e-79 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011447 [exp] 141 / 6e-34 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 129 / 2e-30 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) Lus10037548 [exp] 104 / 2e-22 AT1G79890 645 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10000652 [exp] 74 / 2e-13 AT1G03190 533 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180200 [exp] 1235 / 0 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G008700 [exp] 230 / 5e-62 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G182600 [exp] 143 / 1e-34 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 129 / 1e-30 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2
Representative CDS sequence Show only first row Show all	>Lus10037532 pacid=23167135 polypeptide=Lus10037532 locus=Lus10037532.g ID=Lus10037532.BGIv1.0 annot-version=v1.0 ATGCCGACTTACAAGCTCAGAGGAATCGATGTGGATTTCCCTTTCGAGGCGTATGATTGCCAGCTCGTTTACATGGAGAAAGTGATCGAATCTCTCCAAA ATAAATGCAATGCACTTTTGGAGAGCCCTACTGGAACTGGAAAGACTCTGTGTCTTCTCTGTGCTACATTGGCTTGGAGGAAGAGTTTAGGTGAATTTTC TACTGGTAAATCATCAGAGTCTCATTCATCGCAGTCGAGCAGTAGTTCGCTTCCTACGATAGTGTATACTTCACGAACTCACAGCCAGCTTCGTCAAGTG ATCCAAGAGTTGAAGAGGAGCAGCTACAGGCCTAAAATGGTAATATTAGGGTCCCGGGAACAGTTGTGCATTCATGAAGAAGTCAGTACATTACGTGGAA AAGCTCAGACAAATGCTTGCCGTCACATTTCCAGAAATCGGGGGAAGCGTCAATGTTCCCATTTCTGTCAAGTTTCTGATTACGTAAAACAGAATCCACA GCTTGGAGATGAACCTGTTGACATAGAAGATTTGGTTAAAATTGGGAAGCAATTTGGACCGTGTCCATACTATTTATCAAGGGACATCCATAAATCTGTT GACATATTATTTGCACCTTATAATTATCTAATTGATCGTAGCAACAGAAAATCTCTTGCTGTTGATTGGGAGAGTAGTATACTAATATTTGATGAAGCAC ACAATCTGGAGGGTATATGTGCTGATGCTGCATCTTTTGATCTCCATTCTGGTCTTCTGACAACTTGCATTTCTGAAGCACAATCCTGTATTGATCTGGC TATATTAAGAACGGATAAATCACAGAATCCTGAGAATTTCGCCATTCTGAAAGGCGAGTTTATATTTTCTACATATTTCACATTGCTTCTGAAGCTTGAG AAGCAGATAGCTGAGCTACCCATCGAATCCACTGAATTAGGATTCACTAGGCCTGGACCGTACATTTATGAACTACTTGCTGACCTGAATCTTACGCATG ACACTGCATCCAAGCTCATTGATACAATCAATGAAGGTGCTTTGCTTTTCGAAGAAGAAAAACAGAAAACAGCAAAAGGCGCAGTCTGTCGCCTTGAAAG TAAGGCATCGAGAACTTTAAGCTGGTGGTGCTTTAATCCAGGCATTGCCATGGAAGAATTCGCCAAGATGGGTGTTGGCTCTATCATTTTGACTTCTGGG ACATTATCACCTATGGAGTCATTTGCTCAAGAGTTGAAACTGAGCTTTCCTGTACGGTTGGAGAACCCTCATGTCATATCTGCAAATCAGATTTGGGCAG GGGTTGTTCCGGTTGGCCCATCAGGGCATTCATTTAACTCATCTTATAGAAATCGTGATTCTGAAGAATACAAGAGAGAGTTGGGAAATGCTATTGTTAA TTTCACTCGGATTGTACCTGATGGGCTGCTTGTGTTCTTTCCTTCATACTATGTTCTGGACAAATCCATTGAATGCTGGAAGAGTACGGATAATCATAAC TCAACACCAATATGGGAAAGAATCTGCAGGTACAAGAAACCAGTTGTAGAACCTAGACAATCATCTCTTTTTCCATCGGCAATTGAGGATTATATGGCTA AGTTGAAGGACACCTCACATTCGGGTGCAGTATTTTTTGCTGTTTGTCGTGGCAAGGTAAGTGAAGGATTAGATTTTGCAGATCATGCTGGGAGGGCCGT AATCATAACTGGAGTTCCTTTTCCCATGTGGCATGACCCCAAGGTTCGATTGAAGCGCGAGTTCTTGGATCATCAAGCTGTGTTCTCAAAGGGTGAATTC AAGTCGGACATTCTAACTGGTGAAGGCTGGTACAGCCAACAAGCATCACGGGCTGTGAATCAGGCTGTTGGACGTGTGATTCGCCATCGACATGATTATG GAGCAATTATATTCTGTGATGAAAGGTTTTCAAATGCAAATCAGCAGTCCCAAATTTCACGTTGGATAAGGCCTTATCTTAAGTGTCACCCTGGTTTTGG AGATGTGATTTTCACACTAAGCCGGTTTTTCCGCGATGGAGCATTTAGTGATTCAACGGTGCTCAAGTCTACAAAACAAGTCACTCAAGAGAAGATGTCG CAGGAAATGATCATGCCTATAAATAAGAAGGCTTCCGATATATCCTCGGTGTTTCCTTCACTTCAAGGCAAAAGCTTCATGGATTCAAGCAAATTACACG AAGTTCTTCCAGCTAATGGTGCATCTCCTAATCCTCCAAAGAACAACCAAGACTTCATCTTGAAGTATTCGAAAGGGTTAATATCAAAAGAGAAAAAAGT GCTTGTTCTGGGAGGTAATGCTGTAAAGCTTCAAGATAAGGAGATGGTTAATCTGATTAGCGAATCTTCGGCTAGGGGAATCCCTAGTGGACAGGGACTG CTGCCATGTGGTGATAAGAAGCGTAAGATTTCAAAGGCAGGACACAATGAAGAGATTGATGAACGATCAAAATCAAACAATTCTGGATCTGAAGAGCAAT TCACCTTGGATGATAGAACCAAATCGCATGCTTTGGCTAGATCACAAGTACCGTTTGAACGTGGGCTCCCTCAGAAGGGGATAACTGACACAGCTCATCA TTCTAACGTGTTGTGTACCGGAGACAAGGAAGCAAAAGGGTCAGACTTTCTAAATCAGGCCAAGGAGAAACTCAGTGCCTCGGAATATACCGAGTTTGTG AGCCTTATGAAAGGCTTGAGATCCAAAGTCATGAAAACAGGGCATGTACTACCGTCTATTGTGAAGTTGTTCTCGGGGCCAGAGAGGTTTCCACTGCTTG AAAGATTCAGAGACTATGTACCTGCAAAGCATCGCTCTCTGTACGAGCAGTACATTGGAACAAATGGTCAACCATCTTGTACCATTAAAACAGAGGGAAA GGACCGTTGA
AA sequence Show only first row Show all	>Lus10037532 pacid=23167135 polypeptide=Lus10037532 locus=Lus10037532.g ID=Lus10037532.BGIv1.0 annot-version=v1.0 MPTYKLRGIDVDFPFEAYDCQLVYMEKVIESLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGEFSTGKSSESHSSQSSSSSLPTIVYTSRTHSQLRQV IQELKRSSYRPKMVILGSREQLCIHEEVSTLRGKAQTNACRHISRNRGKRQCSHFCQVSDYVKQNPQLGDEPVDIEDLVKIGKQFGPCPYYLSRDIHKSV DILFAPYNYLIDRSNRKSLAVDWESSILIFDEAHNLEGICADAASFDLHSGLLTTCISEAQSCIDLAILRTDKSQNPENFAILKGEFIFSTYFTLLLKLE KQIAELPIESTELGFTRPGPYIYELLADLNLTHDTASKLIDTINEGALLFEEEKQKTAKGAVCRLESKASRTLSWWCFNPGIAMEEFAKMGVGSIILTSG TLSPMESFAQELKLSFPVRLENPHVISANQIWAGVVPVGPSGHSFNSSYRNRDSEEYKRELGNAIVNFTRIVPDGLLVFFPSYYVLDKSIECWKSTDNHN STPIWERICRYKKPVVEPRQSSLFPSAIEDYMAKLKDTSHSGAVFFAVCRGKVSEGLDFADHAGRAVIITGVPFPMWHDPKVRLKREFLDHQAVFSKGEF KSDILTGEGWYSQQASRAVNQAVGRVIRHRHDYGAIIFCDERFSNANQQSQISRWIRPYLKCHPGFGDVIFTLSRFFRDGAFSDSTVLKSTKQVTQEKMS QEMIMPINKKASDISSVFPSLQGKSFMDSSKLHEVLPANGASPNPPKNNQDFILKYSKGLISKEKKVLVLGGNAVKLQDKEMVNLISESSARGIPSGQGL LPCGDKKRKISKAGHNEEIDERSKSNNSGSEEQFTLDDRTKSHALARSQVPFERGLPQKGITDTAHHSNVLCTGDKEAKGSDFLNQAKEKLSASEYTEFV SLMKGLRSKVMKTGHVLPSIVKLFSGPERFPLLERFRDYVPAKHRSLYEQYIGTNGQPSCTIKTEGKDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79950			RAD3-like DNA-binding helicase...		Lus10037532 [exp]	0	1
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	3.2	0.8885
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	4.6	0.8555
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10007337 [exp]	9.6	0.8720
AT1G30240			unknown protein		Lus10026071 [exp]	11.9	0.8665
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	18.0	0.8115
AT2G03667			Asparagine synthase family pro...		Lus10026669 [exp]	18.1	0.7694
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	20.7	0.8566
AT1G06720			P-loop containing nucleoside t...		Lus10007980 [exp]	21.8	0.8558
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	23.5	0.8582
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	26.3	0.8424

Compare expression of checked genes

Lus10037532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.