Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20300 461 / 8e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 150 / 1e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 152 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 142 / 5e-38 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 143 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 139 / 4e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 132 / 5e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15200 132 / 7e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 130 / 6e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G22670 129 / 1e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011459 [exp] 697 / 0 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 149 / 1e-39 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 144 / 8e-38 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 143 / 1e-37 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 139 / 2e-36 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 134 / 6e-34 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 127 / 1e-31 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 126 / 2e-31 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003427 [exp] 123 / 2e-31 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G245400 [exp] 468 / 7e-163 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245500 [exp] 383 / 2e-130 AT1G20300 571 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 148 / 9e-40 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 149 / 2e-39 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 145 / 1e-38 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 144 / 3e-38 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 136 / 4e-35 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 132 / 4e-34 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G147200 [exp] 132 / 4e-34 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083900 [exp] 132 / 1e-33 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037533 pacid=23167226 polypeptide=Lus10037533 locus=Lus10037533.g ID=Lus10037533.BGIv1.0 annot-version=v1.0 ATGGCGGCAATCCACTCCCGCCTCCGCCTTCCAAACTCCCTCTCTCCAATCTCACAACGATTCCTTCAATCCTCATTCTCTTCTTCCACAACAGTCTCAC AACAATCAACCATCCACTCTGACGAAGAATCCGACTCCAACGGCATCCCCGACGATCACAGAACCACCGCCGTCCTGCCACCGGAAGAAGCCGCCACAGT CGTGAAATTCCATTCCTTAATCAAACACCATTACCGCCACAACCCGGATCCAAGCCCTACCTCCTGGTCTCCCAATTTCTCGATCCCATCTCTCTCCCAC GACTTCTCCCAACTCGCCGGAACCCTAACGCCTTCCCTAATCCGGAGAGTCATCGAGAAATGCGGCGGCGGCCGCCACGGCATCCCTTTCCACCAGACAC TCGCGTTCTTCAACTGGTCAATCAATCAGCAGGTTGAGAAATCTCAATCTCCGTCTCTCTCCCCTGAACCGTACAACGAGATGGTGGATCTCGCCGGTAA GATGAAGCTCTTCGATCTAGCATGGAACGTCATCGATCTCATGAAGGAGAGAACAGTCGAGATCACACCGGAAACCTTCTCCATCCTCATCCGCCGCTAC ATCCGCGCCGGATTCCCCAGCGAGGCCATCCACGCGTTCAATCGCATGGAGGATTACAACTGTAAGCCCGATTTGATTTCCTTCTCCGTCGTGATCAGTA ATCTCTGCAGGAAACGGCTGGCCGCCGAAGCTCAATCCTTTTTTGACGAACTGAAATCGAAATTCAATCTGGACGTTATCGTCTACACTAACCTGGTCCG CGGATGGTGCCTTGCGGGAAACATACAGAATGCACAGAAGATGTTCGACGAAATGAAAACCGCCGGAATCCAACCCAATGTGTATACTTACAGCATTGTG ATCGACACCTTATGTAGATGCGGCCAGAGTACACGAGCTTTCGATGTATTCGCCGAAATGATCGATTCCGGCTGCCAGCCAAACTCGGTGACGTTCAACA ATCTGATGAGAGCTCACGTCAAAGCCGGAAGAACAGAGAAAGTTCTCCAGGTGTATAATCAAATGAGGAAGCTCAAATGCGAGCCGGATACTATCACCTG CAATTTCCTGATCGAGACTCACTGTAAAGACGGAAGTCGAGGGGAATGTGAATACATACCGGATTTTGATCAGGATGTACTGTGGGATGGGGCATTGGAA CAATGCCTACAAGTTTTTTAG
AA sequence Show only first row Show all	>Lus10037533 pacid=23167226 polypeptide=Lus10037533 locus=Lus10037533.g ID=Lus10037533.BGIv1.0 annot-version=v1.0 MAAIHSRLRLPNSLSPISQRFLQSSFSSSTTVSQQSTIHSDEESDSNGIPDDHRTTAVLPPEEAATVVKFHSLIKHHYRHNPDPSPTSWSPNFSIPSLSH DFSQLAGTLTPSLIRRVIEKCGGGRHGIPFHQTLAFFNWSINQQVEKSQSPSLSPEPYNEMVDLAGKMKLFDLAWNVIDLMKERTVEITPETFSILIRRY IRAGFPSEAIHAFNRMEDYNCKPDLISFSVVISNLCRKRLAAEAQSFFDELKSKFNLDVIVYTNLVRGWCLAGNIQNAQKMFDEMKTAGIQPNVYTYSIV IDTLCRCGQSTRAFDVFAEMIDSGCQPNSVTFNNLMRAHVKAGRTEKVLQVYNQMRKLKCEPDTITCNFLIETHCKDGSRGECEYIPDFDQDVLWDGALE QCLQVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10037533 [exp]	0	1
AT2G40290			Eukaryotic translation initiat...		Lus10007521 [exp]	1.0	0.9199
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	4.7	0.9136
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	4.9	0.9062
AT5G02850			hydroxyproline-rich glycoprote...		Lus10002749 [exp]	8.1	0.8589
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	8.4	0.8873
AT1G52530			unknown protein		Lus10003678 [exp]	10.5	0.8483
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	12.0	0.8851
AT3G19120			PIF / Ping-Pong family of plan...		Lus10025271 [exp]	12.0	0.8521
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	12.6	0.8878
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	14.8	0.8663

Compare expression of checked genes

Lus10037533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.