Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52330 155 / 2e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT4G13270 130 / 1e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011458 [exp] 336 / 2e-118 AT1G52330 168 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10043216 [exp] 135 / 2e-39 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011095 [exp] 133 / 8e-39 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023631 [exp] 133 / 1e-38 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024264 [exp] 105 / 6e-28 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 41 / 0.0003 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G055000 [exp] 186 / 3e-59 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.001G180600 [exp] 184 / 3e-58 AT1G52330 192 / 9e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G159400 [exp] 124 / 2e-35 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 58 / 2e-10 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 48 / 8e-07 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10037534 pacid=23167328 polypeptide=Lus10037534 locus=Lus10037534.g ID=Lus10037534.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCCGCCGAACAATCCGATCCAGAATCGTCACAGCCCGACAGCTCAGTTCCCTTATTATCAACCCAAAACGACGCCGTTTCGGACACCTCCG GCTGCCGCCGGCGTACGGCACTCATCACAACCGCGGCGGCATCTCTCACCCTTGTCTTCCTCCTCGTCGCATCTGCCTACGAATTCTGGCCGTCCGATCC GACCCTGACGATCGCACGGCTGCGGCTGACCAAGGTCAAAATCCGGACATTCCCGGTCCTGAACGTCGACATAACGATGAACGTGACGATGGAGGTGCGG AACGCCGACGTCTACGTGGCGGAGCTGAGGAGGATGGACGTGGAGGTGATGTACAGAGGGAAACGGATCGGGGAGGTGAAAATCGGAAAGGAGGAAGTGA TCCGAGCTTATGCGACGACGTATTTGGAGGCGGAGATGAAGTTGAATGGGATCGGAGTTATCTCCGACGCGCTGTTGCTGATCGGAGACTTGAAGAAAGG GAAAGTGCCGTTCGGTACGGTTGTTGAAGTTGGTGGGAAGTTTGGTTTTCTCTGCTTTGGTTTCCCTTTGAAGGCGAAATTGTCGTGCCGAGTTTTGCTC AACACCCACAATCAAACCATCGTCCGCCAGAGCTGCTACCCTCTCTAG
AA sequence Show only first row Show all	>Lus10037534 pacid=23167328 polypeptide=Lus10037534 locus=Lus10037534.g ID=Lus10037534.BGIv1.0 annot-version=v1.0 MAAAAEQSDPESSQPDSSVPLLSTQNDAVSDTSGCRRRTALITTAAASLTLVFLLVASAYEFWPSDPTLTIARLRLTKVKIRTFPVLNVDITMNVTMEVR NADVYVAELRRMDVEVMYRGKRIGEVKIGKEEVIRAYATTYLEAEMKLNGIGVISDALLLIGDLKKGKVPFGTVVEVGGKFGFLCFGFPLKAKLSCRVLL NTHNQTIVRQSCYPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	0	1
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	2.0	0.8988
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	3.2	0.8837
AT1G31130			unknown protein		Lus10028643 [exp]	3.5	0.9215
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	5.9	0.8557
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	5.9	0.8930
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10027710 [exp]	6.2	0.9092
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	7.3	0.8951
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	9.9	0.8587
AT5G02090			unknown protein		Lus10024357 [exp]	10.4	0.8711
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	11.4	0.8639

Compare expression of checked genes

Lus10037534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.