Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65320 415 / 1e-143 Cystathionine beta-synthase (CBS) family protein (.1) AT5G53750 58 / 4e-09 CBS domain-containing protein (.1) AT1G15330 54 / 7e-08 AtPV42a Cystathionine beta-synthase (CBS) protein (.1) AT4G27460 51 / 9e-07 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011457 [exp] 625 / 0 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1) Lus10042702 [exp] 83 / 2e-17 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10025651 [exp] 76 / 6e-15 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10018183 [exp] 76 / 7e-15 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10029665 [exp] 65 / 3e-11 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10004227 [exp] 44 / 0.0002 AT1G15330 418 / 5e-146 Cystathionine beta-synthase (CBS) protein (.1) Lus10029432 [exp] 43 / 0.0003 AT1G15330 398 / 6e-139 Cystathionine beta-synthase (CBS) protein (.1) Lus10030788 [exp] 43 / 0.0004 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G087100 [exp] 449 / 5e-157 AT1G65320 521 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.019G052650 [exp] 444 / 6e-155 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G402900 [exp] 81 / 2e-16 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.011G122000 [exp] 77 / 4e-15 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.004G041000 [exp] 72 / 1e-13 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 61 / 5e-10 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10037535 pacid=23167137 polypeptide=Lus10037535 locus=Lus10037535.g ID=Lus10037535.BGIv1.0 annot-version=v1.0 ATGGCTTCAGTGTTCCTCTACCACGTAGTTGGCGATCTAACCGTGGGGAAGCCGGAGCTCGTGGAGCTCTGCGACTCCGAGACTGTCGAGTCCGCCATAA GAGCGATCGGGGACTCCACCGAGTGCGGGATCCCAGTGTGGAAGAAGAGATCGAGTTTGATCGAAACCAGCGACATGAGGCAACAGAGGTTCGTCGGTAT TCTCAATTCCCTCGATATCGTATCCTTCCTCGCCAGGCCGGATTGCTTGGCCGATCAGGACATGGCCATGAGTACAAAGGTTTCTGAGGTCGTTGTTCAT AACAATTCGCTCCTCAAACAGGTCGATCCTGGAACAAGGCTGATAGATGCACTAGAAATGATGAAGCAAGGAGTTCGGCGTCTTCTCGTCCCAAAAACAA AAGGTTGGAAGCGAGTAAGCAAGAGATTCTCAGTCTATTACCACGGCAAATGGCTCAAGAACGCAACCGACACTCCGAACAGCAGCAGCAACAACCTCAT CATCAATTCCGCCAACCTCCCTTCATCTTCGTCCCCCACCGCTAGCCACGACAAATTCTGCTGCCTATCCAGAGAAGACGTCATCCGCTTCCTCATCGGT TGCCTCGGCGCTCTAGCACCGATTCCTCTTTCCTCAATCTCCTCCTTAGAAGCCATCAACCTAAACTACAAACTCGTCGAATCCTCTCTTCAAGCCATCG AAGCAACCCGGAAGGCCCCCGATGATCCCAGCGCGGTTGCTGTTGTGGAGGCCGTCTCAGACGGGCAGTACAAGATAATCGGAGAGATATCGGCCTCTAG GTTGTGGAAGTGTGATTATTTGGGAACGGCGTGGGCTCTAGCGAATCTCTCTGCCGGACAGTTTGTGATGGGCGTGGAAGATGCTGGTTCGGCTTTCTTG TCCGATTCGCCAATGAGGGGTAGGAAATTGAGTAGTGGAAGGAGCGGAGGGTTCGAGATTTCGAGTTCAGGAGGAGGAAGGATGATGTATAGAGGAAGAA GTGCTCCTTTGACTTGCAAAGTGAAGAGTTCGTTAGCTGCAGTGATGGCTCAGATGCTTTCTCACAGGGTAACTCATGTGTGGGTGACTGAAGAAGATAG CGACGATGTCTTGGTTGGGATGGTTGGTTATGCCGATATTTTGGCAACCATGACGAAAGAACCTGCCACTGTCGCTTTGCCTGCATCATGA
AA sequence Show only first row Show all	>Lus10037535 pacid=23167137 polypeptide=Lus10037535 locus=Lus10037535.g ID=Lus10037535.BGIv1.0 annot-version=v1.0 MASVFLYHVVGDLTVGKPELVELCDSETVESAIRAIGDSTECGIPVWKKRSSLIETSDMRQQRFVGILNSLDIVSFLARPDCLADQDMAMSTKVSEVVVH NNSLLKQVDPGTRLIDALEMMKQGVRRLLVPKTKGWKRVSKRFSVYYHGKWLKNATDTPNSSSNNLIINSANLPSSSSPTASHDKFCCLSREDVIRFLIG CLGALAPIPLSSISSLEAINLNYKLVESSLQAIEATRKAPDDPSAVAVVEAVSDGQYKIIGEISASRLWKCDYLGTAWALANLSAGQFVMGVEDAGSAFL SDSPMRGRKLSSGRSGGFEISSSGGGRMMYRGRSAPLTCKVKSSLAAVMAQMLSHRVTHVWVTEEDSDDVLVGMVGYADILATMTKEPATVALPAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10031101 [exp]	1.0	0.8937
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	1.4	0.8832
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	3.5	0.8602
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	4.0	0.8504
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	4.6	0.8653
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	4.9	0.8523
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	5.5	0.8565
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10015144 [exp]	5.7	0.8451
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	8.9	0.8455
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	9.2	0.8447

Compare expression of checked genes

Lus10037535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.