Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79910 181 / 2e-53 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 141 / 1e-36 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 132 / 4e-35 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 102 / 1e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 86 / 2e-18 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 86 / 4e-18 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 74 / 5e-14 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 72 / 2e-13 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 71 / 3e-13 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G13340 62 / 2e-10 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011455 [exp] 447 / 4e-158 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10035885 [exp] 246 / 4e-77 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 231 / 5e-71 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 235 / 3e-70 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10034905 [exp] 166 / 8e-46 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10023635 [exp] 163 / 1e-44 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10038167 [exp] 140 / 1e-36 AT5G48840 447 / 7e-155 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10006061 [exp] 100 / 4e-23 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 99 / 1e-22 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G181300 [exp] 195 / 4e-57 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 178 / 5e-51 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 158 / 6e-43 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.003G054700 [exp] 154 / 2e-42 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054601 [exp] 149 / 1e-40 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 97 / 5e-22 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 97 / 7e-22 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 94 / 2e-21 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.019G087400 [exp] 93 / 2e-20 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 84 / 3e-17 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10037536 pacid=23167288 polypeptide=Lus10037536 locus=Lus10037536.g ID=Lus10037536.BGIv1.0 annot-version=v1.0 ATGACGAAGGTGAGGCTGGATTCGTCGGCGAAGAAGAAGAAAGCTGTGGCTAAGTATCTGAGACGCGACATCGCTGACCTTCTCAGGAATGGCCTCGATT CCAATGCTTACGGCAGGGCAAAGTTTTCTCATTCTGAGCAGGCTGAAGGGCTGATAGTGGAGCAGAACATGGTAGCTGCTTACAAGTTCATGGACGAATT CTGCGACTGCATTTCCACCAATCTTGCTACCTTAGACAAACAGATGGAATGCCCCAAGGAATGCAGAGAAGCCATACAGAGTTTGATGTATGCAGCAGCA AGGTTAGCTGAGTTCCCAGAACTCCGCGACCTTCGATCTGTGTTTGCACAGAGATACAGAGATTGTCTCGAATTGTTTCTTAACAAAGAGTTTGGTGAGC TGCTGAATCCAAGGCCTGCCACAAAAGAGATGAAGCTTCAGCTACTTGTTGATGTTGCACAAGAATTCTCCATCAAATGGGATCCAGAACTTTTCGATCA GAAGCTCTCGAAACCTGATATTACTCCTCATGGTGTAGCGAACCTGTCGAGAAGACGAAGCGAAGCAGGAGCAGAACCACCAGCTCCGGTTTACGTCAGA GCCAGGAGTGAGTCCACAGCAACAAGGAGAGCCTCCATTAGTACTGCTTCTCCCGTTGCTTCAGATGCTAGTAAGCCTTCCAAGTTCATGCCTCCGCCAC CGTATGTCCGAGCCAATCCTGAAGCCTTACAACAGAAGCCTCGATCCGTTCGACAACGGCAACAAGCAACAAAACTGGACGAGGAGGAAAGGAAGCTCGA CGAGCTATTGATACAGCAGAGCACAAAGAAAACAACAGCTTACGAGAGGAGCGTTACACATGGAGCGTTACACATCCGGCCGGTACGAAGCCTCTTTCGT GGCGGTCAAGGAACAGTGATCAGAGGCATGCTCAATCTCTATCGGAAGTGCCGTCAGGACATGTCCATCCGAACCTACCTGATTATGATTCATTGGCGGA CCGGATCGCTTCGATCAAGGGGAAAAATTGGTGATCTGAGATTGGGGGAAGGCCTTTTTAGGGTTTTCTTGTTGCTTACAAAAAAACCTGTCAGGTTTTT GGAGTCTTAG
AA sequence Show only first row Show all	>Lus10037536 pacid=23167288 polypeptide=Lus10037536 locus=Lus10037536.g ID=Lus10037536.BGIv1.0 annot-version=v1.0 MTKVRLDSSAKKKKAVAKYLRRDIADLLRNGLDSNAYGRAKFSHSEQAEGLIVEQNMVAAYKFMDEFCDCISTNLATLDKQMECPKECREAIQSLMYAAA RLAEFPELRDLRSVFAQRYRDCLELFLNKEFGELLNPRPATKEMKLQLLVDVAQEFSIKWDPELFDQKLSKPDITPHGVANLSRRRSEAGAEPPAPVYVR ARSESTATRRASISTASPVASDASKPSKFMPPPPYVRANPEALQQKPRSVRQRQQATKLDEEERKLDELLIQQSTKKTTAYERSVTHGALHIRPVRSLFR GGQGTVIRGMLNLYRKCRQDMSIRTYLIMIHWRTGSLRSRGKIGDLRLGEGLFRVFLLLTKKPVRFLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79910			Regulator of Vps4 activity in ...		Lus10037536 [exp]	0	1
AT2G39650			Protein of unknown function (D...		Lus10023412 [exp]	5.7	0.8702
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10020627 [exp]	10.1	0.8503
AT2G19130			S-locus lectin protein kinase ...		Lus10039762 [exp]	12.1	0.8016
AT5G07610			F-box family protein (.1)		Lus10041733 [exp]	12.7	0.8513
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038815 [exp]	16.0	0.8300
AT3G52105			unknown protein		Lus10019704 [exp]	20.2	0.8213
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	26.1	0.7851
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	44.5	0.8360
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10016173 [exp]	49.2	0.8068
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	55.0	0.8072

Compare expression of checked genes

Lus10037536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.