Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62020 1368 / 0 Coatomer, alpha subunit (.1) AT2G21390 1367 / 0 Coatomer, alpha subunit (.1) AT3G15980 261 / 5e-75 Coatomer, beta' subunit (.1.2.3.4.5) AT1G52360 254 / 1e-72 Coatomer, beta' subunit (.1.2) AT1G79990 253 / 5e-72 structural molecules (.1.2.3.4.5) AT3G49660 124 / 5e-31 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 115 / 3e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 102 / 2e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 105 / 3e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 103 / 2e-22 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011454 [exp] 1523 / 0 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 1446 / 0 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 1429 / 0 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 1427 / 0 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10035883 [exp] 1206 / 0 AT1G62020 1288 / 0.0 Coatomer, alpha subunit (.1) Lus10033092 [exp] 256 / 5e-73 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 174 / 9e-49 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 171 / 3e-47 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10037525 [exp] 162 / 3e-44 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G074800 [exp] 1415 / 0 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 1407 / 0 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.003G056300 [exp] 255 / 7e-73 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 255 / 1e-72 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 182 / 9e-51 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.007G009500 [exp] 117 / 1e-28 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 115 / 5e-28 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 112 / 7e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 109 / 2e-24 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 107 / 1e-23 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] Beta_propeller PF04053 [flax] [poplar] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Lus10037538 pacid=23166999 polypeptide=Lus10037538 locus=Lus10037538.g ID=Lus10037538.BGIv1.0 annot-version=v1.0 ATGTTGACGAAGTTTGAGACGAAGAGTAGTAGAGTGAAGGGGCTGAGTCTTCACAGTAAGAGGCCATGGGTCCTAGCGAGTCTTCACAGCGGTGTGATCC AGCTGTGGGACTACCGTATGGGGACTCTCATTGATCGGTTCGACGAGCATGATGGTCCAGTTAGAGGTGTTCATTTCCACAAATCTCAGCCTCTCTTTGT CTCCGGAGGTGATGATTACAAGATTAAGGTTTGGAACTACAAGTTACATAGGTGCCTCTTTACCCTTCTGGGACACCTTGATTACATCCGTACAGTGCAG TTTCATCACGAGTACCCATGGATTGTGAGTGCCAGTGATGATCAGACAATCCGCATTTGGAACTGGCAGTCACGTGCTTGCATTTCTGTTCTGACAGGCC ACAATCATTATGTTATGTGTGCCTCATTCCATCCTAAAGAAGATCTTGTTGTATCAGCTTCTCTGGACCAGACTGTCCGAGTTTGGGACACTGCTGCATT GAAAAAGAAAACTGCGTCTCCTTCTGATGATATAATGGGGTTGAGTCAATTGAATGGAGATCTTTTTGGTGGTATTGATGCTGTTGTTAAGTACGTATTG GAAGGTCATGACCGTGGAGTAAATTGGGCTTCTTTCCACCCTACACTTCCTTTGATCGTCTCCGGAGCTGATGATCGTCAAGTCAAGTTGTGGCGGATGA ATGATACAAAGGCTTGGGAAGTGGACACTTTGAGAGGACACATGAATAATGTTTCTTGTGTTATGTTCCATGCTAAGCAAGATATAATTGTGTCCAATTC AGAGGATAAGAGTATTAGAGTTTGGGATGCAACTAAGAGAACTTTGCTTCAAACTTTCCGTCGTGAGCAGGACCGCTTTTGGATCCTTGCAGCTCACCCT GAGATGAACCTTCTTGCTGCTGGTCATGACACTGGGATGATTGTGTTTAAGTTGGAGAGAGAGAGGCCTGCATTTGCTGTAAGCGGAGACTCTCTCTTTT ACACGAAGGATAGGTTTTTGCGGTTTTTTGAGTATTCTAGTCAGAAGGAAAACCAGGTGATTCCCATCAGGCGTCCTGGTAGTGCTAGCTTGAATCAAAG TCCAAGAACTCTTTCTTACAGCCCTACTGAAAATGCAGTTCTGTTGTGTTCGGACATAGATGGAGGCTCTTATGAACTTTATATAATACAAAAGGATAGT GTTTCGAGGGGTGATTCTGCACAGGATGCAAAGAGAGGAGCAGGTGCTTCGGCAGTCTTCATTGCTCGAAACAGGTTTGCTGTGCTTGACAAAAGTAGCA ATCAAGTATTGGTCAAGAACCTAAAGAATGAGGTTGTCAAAAAAAGTGCTCTTCCCATTGCTACAGATGCAATTTATTATGCTGGGACTGGTAGTCTGCT TTGTAGTGCTGAGGGTAGAGTTGTCATATTCGATCTTCAGCAGAGACTTATTATTGGGGATCTTCCAGCATCTGTTGTGAAGTATGTCGTTTGGTCTAAT GACATGGAAGCTGTTGCCTTATTGAGCAAGCATGCCATCATCATTGCAAATAAAAAGCTTGTGCATCAATGTACCCTTCACGAGACAATTCGTGTAAAGA GTGGAGCCTGGGATGACAATGGTGTGTTCATATATTCTACTTTAAACCACATGAAGTATTGCCTTCCGAATGGAGATAGTGGGATAATCAGAACCCTTGA TGTCCCAATATACATTACCAAGATTTCTGGAAACACAATCTTTTGCTTGGATAGAGAAGGGAAGAACCGCTCAATCGTCATTGATGCTACAGAATACATG TTCAAACTGTCTCTTCTCAAAAAGAGATATGATCATGTTATGGGCATGATCAGGAACTCGCAGCTGTGTGGGCAGGCTATGATTGCATATTTGCAGCAGA AGGGGTTCCCAGAAGTTGCTTTGCATTTCGTCAAGGATGAAAGAACACGGTTTAATTTGGCTCTGGAAAGTGGCAACATACAGATTGCCGTCGCTTCAGC CAAAGAAATTGACGAGAAAGATCATTGGTACAGGCTAGGAGTGGAAGCTCTGCGCCAAGGCAATGCAGGGAATATAGAAAAACTGTCAAAGATGCTGAAA ATTGCCGAGGTTAAGAATGATGTCATGGGTCAGTTCCACAATGCCCTCTATTTGGGCGACATTCACGAGCGTGTGAAGATACTCGAGACTTCTGGTCAGA TACCCTTGGCCTACATCACAGCTAAAGTGCACGGGCTCGAGGAAGTAGCCGAGCGTCTAGCAGCAGATTTGGGAGATAATGTTCCTTTTGGGAGATAA
AA sequence Show only first row Show all	>Lus10037538 pacid=23166999 polypeptide=Lus10037538 locus=Lus10037538.g ID=Lus10037538.BGIv1.0 annot-version=v1.0 MLTKFETKSSRVKGLSLHSKRPWVLASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQ FHHEYPWIVSASDDQTIRIWNWQSRACISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDTAALKKKTASPSDDIMGLSQLNGDLFGGIDAVVKYVL EGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTLLQTFRREQDRFWILAAHP EMNLLAAGHDTGMIVFKLERERPAFAVSGDSLFYTKDRFLRFFEYSSQKENQVIPIRRPGSASLNQSPRTLSYSPTENAVLLCSDIDGGSYELYIIQKDS VSRGDSAQDAKRGAGASAVFIARNRFAVLDKSSNQVLVKNLKNEVVKKSALPIATDAIYYAGTGSLLCSAEGRVVIFDLQQRLIIGDLPASVVKYVVWSN DMEAVALLSKHAIIIANKKLVHQCTLHETIRVKSGAWDDNGVFIYSTLNHMKYCLPNGDSGIIRTLDVPIYITKISGNTIFCLDREGKNRSIVIDATEYM FKLSLLKKRYDHVMGMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGNIEKLSKMLK IAEVKNDVMGQFHNALYLGDIHERVKILETSGQIPLAYITAKVHGLEEVAERLAADLGDNVPFGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	1.7	0.9695
AT1G35220			unknown protein		Lus10036487 [exp]	1.7	0.9755
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	2.4	0.9718
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	2.8	0.9688
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	4.2	0.9625
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	5.7	0.9533
AT1G35220			unknown protein		Lus10010355 [exp]	5.9	0.9590
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	5.9	0.9656
AT2G25800			Protein of unknown function (D...		Lus10008430 [exp]	6.2	0.9514
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	6.7	0.9561

Compare expression of checked genes

Lus10037538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.