Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21390 546 / 0 Coatomer, alpha subunit (.1) AT1G62020 541 / 0 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011454 [exp] 693 / 0 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 583 / 0 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 579 / 0 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 574 / 0 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10035883 [exp] 521 / 4e-177 AT1G62020 1288 / 0.0 Coatomer, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G069700 [exp] 581 / 0 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 569 / 0 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06957 [flax] [poplar] COPI_C Coatomer (COPI) alpha subunit C-terminus
Representative CDS sequence Show only first row Show all	>Lus10037539 pacid=23167299 polypeptide=Lus10037539 locus=Lus10037539.g ID=Lus10037539.BGIv1.0 annot-version=v1.0 ATGAGTTCTGGTGATTGGCCCCTACTGAGGGTTATGAAAGGAATCTTCGAAGGTGGACTCGAAAACATGGCAAGAGCGGACGATGACGATGAAGAAGAAG CAATCGAAGGCGATTGGGCTGAGGAACTGGAACTGGTTGATACTAATGGTTTACAGAATGGGAACGCAGAAGCTGGTTTGGAGGATGGTGATGTTGGCGA AGACAATGATGAAGAAGGAGGTTGGGATCTTGAAGGCTTGGATCTACCACAAGAGGCCGATACCCCGAGAGCTTCTGTAAGTGCTCAATCCTCGGTCTTC GTAGCTCCGACTCCTGGCATGCCTGTGAGTCACATATGGACTCAAAAGTCGTCACTTGCTGCCGAGCACGTTGCAGCGGGGAATTTCGATACTGCCATGA GACTGCTCCATAGGCAAATCGGAATAAAGAATTTCGGTCCATTGAAATCAATGTTCAGGGATCTCCACACCGGAAGCCAGTCCTACCTGCGAGCTATGTC AGCCACTTCCGTGGTAACGCTAGCAGTTGAAAAATGGAACGAGTCTGCAAGCCTGAATGTAAGAGGCGCTCCATCGCTGGTTTTCAGTTTCACTCAGCTG GAAGAAAAGCTCAAGGTCGGCTACAAATCCACCACAACTGGGAAATTCACCGAGGCTCTCAATCTCTTTATCAGCATTCTTCACACCATCCCTCTGATTG TCGTGGAGACACGGAGGGAGGTCGATGAGGTCAAGGAGCTGATCATCATAGTCAAGGAATACGTCCTGGGGCTACAGATGGAACTTAAAAGAAGGGAAAT GAAAACCGACCACCCGGTTCGCCAGCTGGAACTGGCTGCCTATTTTACACACTGCAACCTCCAAACCCCTCACTTACGGCTGGCATTGCTGAACGCGATG TTGATAAGCTACAAGGCGAAGAACTTCGTCACAGCCGCTAATTTCGCGAGGCGTCTCCTGGAGACGAACCCGCAAGTCGAGAATCAGGCAAAGACGGCTA GACAGGTGTTGCAGGCTGCGGAGAGGAACATGACCGATGCCACACAGCTGAACTACGATTACCGGAATCCGTTCGTGGTGTGTGGAGCTACTTACGTGCC AATATACAGAGGGCAGAAAGACGTGTCGTGCCCGTACTGTTCAGCCAAGTTCGTTCCGGCCGAGGATGGGAAGATATGTGCAGTTTGTGATCTTGCGGTT GTTGGTAGCGATGCTTCTGGGTTGACGTGTTCGTCTTCTCAGATCCGTTGA
AA sequence Show only first row Show all	>Lus10037539 pacid=23167299 polypeptide=Lus10037539 locus=Lus10037539.g ID=Lus10037539.BGIv1.0 annot-version=v1.0 MSSGDWPLLRVMKGIFEGGLENMARADDDDEEEAIEGDWAEELELVDTNGLQNGNAEAGLEDGDVGEDNDEEGGWDLEGLDLPQEADTPRASVSAQSSVF VAPTPGMPVSHIWTQKSSLAAEHVAAGNFDTAMRLLHRQIGIKNFGPLKSMFRDLHTGSQSYLRAMSATSVVTLAVEKWNESASLNVRGAPSLVFSFTQL EEKLKVGYKSTTTGKFTEALNLFISILHTIPLIVVETRREVDEVKELIIIVKEYVLGLQMELKRREMKTDHPVRQLELAAYFTHCNLQTPHLRLALLNAM LISYKAKNFVTAANFARRLLETNPQVENQAKTARQVLQAAERNMTDATQLNYDYRNPFVVCGATYVPIYRGQKDVSCPYCSAKFVPAEDGKICAVCDLAV VGSDASGLTCSSSQIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	1.0	0.9638
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	1.4	0.9441
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	3.0	0.9168
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	3.5	0.9255
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	3.5	0.9395
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	4.9	0.9207
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	5.5	0.9288
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	6.9	0.9346
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10031476 [exp]	6.9	0.9113
AT5G42360			Galactose oxidase/kelch repeat...		Lus10030733 [exp]	9.3	0.8716

Compare expression of checked genes

Lus10037539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.