Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11362 39 / 0.0009 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011453 [exp] 395 / 2e-141 ND 36 / 0.008 Lus10002237 [exp] 116 / 1e-31 ND / Lus10037541 [exp] 101 / 6e-26 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10037542 [exp] 87 / 2e-20 ND / Lus10011452 [exp] 84 / 1e-18 ND / Lus10037537 [exp] 66 / 8e-14 ND / Lus10025781 [exp] 61 / 4e-11 ND / Lus10038294 [exp] 59 / 6e-10 ND 42 / 4e-04 Lus10025807 [exp] 59 / 8e-10 ND 39 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037540 pacid=23167039 polypeptide=Lus10037540 locus=Lus10037540.g ID=Lus10037540.BGIv1.0 annot-version=v1.0 ATGGATCGAAGCATTCTGATCGCCGCAATGATCGTCGTATTGTCTCTGGTTTCCCCGGCCAGATCGGCCGAGGAAGCCGCGAAACCAGCCACCCACACCA AATTCGTGTTCAAGAACCTCGTATCCCTAATGTGCGTGAAGCGCGACAAAACGGCGACCATGGAATCCGTCAAGGCAAACTCGGAGATCAACAGCCTGTG TCAGGGCAAGGACAACCCGACCAAGTGCCTCGAGTTCATGGGGAACGCCCCCAATGCGGACCCCGCGTACGCTGTCAAGACCGACGCGAGTGTCATAAGG AGCGTTATCCGCGAGGGATCCTTCCTCGTCAAGAGGAGCGTCCCCGAGCTGGAGAAGAGCTTCAAGACTTGCTCCGCGGACTTCGAGAAGGCCATGAAGA TGCTCGACGAAGCTGCCGCGGCTACTGGGTCCCACAAAGGGACCGAGGTGGCCACGCTGCTCCGACACGCCTCGACCTATCTCAGGCTGTGCGACAAGTC GTTTCACGGCACCCCTGACATCAAGAAGAAGTATACCGTTAAGGACCTCGCTGAGCAGGCGCGTGATGCTACCGACAAAGTGCTGTTGGTTGCGCTGTGG ATTAATCTACTATGGACCATCGGCGATGAAGTTAGTAGCAAGAGGGTTAGAACCGCTGTTGATGTTCCGACCAGTTTGCTATCTCGCAACGTTGATGCAC CGCAGCGATCACCTCCCACGACATCCCAACTTAACCCGTTTTATCCGAGTTGA
AA sequence Show only first row Show all	>Lus10037540 pacid=23167039 polypeptide=Lus10037540 locus=Lus10037540.g ID=Lus10037540.BGIv1.0 annot-version=v1.0 MDRSILIAAMIVVLSLVSPARSAEEAAKPATHTKFVFKNLVSLMCVKRDKTATMESVKANSEINSLCQGKDNPTKCLEFMGNAPNADPAYAVKTDASVIR SVIREGSFLVKRSVPELEKSFKTCSADFEKAMKMLDEAAAATGSHKGTEVATLLRHASTYLRLCDKSFHGTPDIKKKYTVKDLAEQARDATDKVLLVALW INLLWTIGDEVSSKRVRTAVDVPTSLLSRNVDAPQRSPPTTSQLNPFYPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037540 [exp]	0	1
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	1.0	0.9368
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	3.2	0.9059
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032213 [exp]	6.3	0.8803
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10039643 [exp]	6.5	0.9000
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	6.9	0.8424
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	7.2	0.8898
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003897 [exp]	8.1	0.7792
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	8.1	0.8886
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	8.4	0.8888
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	9.8	0.8602

Compare expression of checked genes

Lus10037540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.