Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14300 41 / 0.0005 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011452 [exp] 133 / 1e-37 ND / Lus10037542 [exp] 129 / 7e-37 ND / Lus10025781 [exp] 103 / 5e-27 ND / Lus10037540 [exp] 101 / 5e-26 ND 40 / 7e-04 Lus10011453 [exp] 100 / 6e-26 ND 36 / 0.008 Lus10038294 [exp] 99 / 4e-24 ND 42 / 4e-04 Lus10025807 [exp] 98 / 1e-23 ND 39 / 0.002 Lus10002237 [exp] 94 / 2e-23 ND / Lus10038295 [exp] 91 / 1e-21 ND 37 / 0.005
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037541 pacid=23167090 polypeptide=Lus10037541 locus=Lus10037541.g ID=Lus10037541.BGIv1.0 annot-version=v1.0 ATGTTCACCTTGTCTTCCCATTTACCTATGTCCACTAGCCAAATGGCCCCGGCATCGTCCTTCGACCTGTCCCCGTCAGGGTCCCTGGACGAGCCAGTCT TATACGGGACGGTCGATGTATTCGTGTGTTCAAAGTACGACCCCTCCGCAACCCTAGAAACCGCCAACAGCGATCCTTCAATCAAGGACCTGTGCGGGTC GACAGACAACCCTAAAAAGTGCCTCGATTTCTTGGGGAACACTCCAGAGGCAGATCCGGCGTACATCTTGCAGGACGATCTCAAGGTCCTGAACACCCTC ATCAAGCAAGGCTCAGCCCTTGCCTCCAAGGAGGGCGCATCGGGGGGCCCGGAGGCCAATAAGGGATTCGACACTTGCGTCGAGAACTACGACAAGGCAT CCAAGAGCGTAGGAGAGGCCGAGAAAGCTTGCGGAGAGTGTGTTAAGGGCGACGAGAAGGGGAAGAAGGTGTGCCCTAAGGAGAAAGTTACCAAAGTAAC CTCGAATCTTAGTGCCGCGGTGGCTACCTTTGGGTTGTGCGATGAGGCGTTGGCTGGTCCAAGTAGTGGAAGCCCCAACACATGGTTACTTAAGGACATG AATGGTGCAATGCTTGAGGCCACCAATATGCTTTTGGTTGTTTCCAAGCAATTAGATCAATGA
AA sequence Show only first row Show all	>Lus10037541 pacid=23167090 polypeptide=Lus10037541 locus=Lus10037541.g ID=Lus10037541.BGIv1.0 annot-version=v1.0 MFTLSSHLPMSTSQMAPASSFDLSPSGSLDEPVLYGTVDVFVCSKYDPSATLETANSDPSIKDLCGSTDNPKKCLDFLGNTPEADPAYILQDDLKVLNTL IKQGSALASKEGASGGPEANKGFDTCVENYDKASKSVGEAEKACGECVKGDEKGKKVCPKEKVTKVTSNLSAAVATFGLCDEALAGPSSGSPNTWLLKDM NGAMLEATNMLLVVSKQLDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10037541 [exp]	0	1
					Lus10011962 [exp]	6.4	0.7982
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	9.1	0.7982
					Lus10022805 [exp]	11.1	0.7982
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	12.8	0.7982
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	14.3	0.7982
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	15.7	0.7982
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	16.9	0.7982
					Lus10030558 [exp]	18.1	0.7982
AT2G14378			Protein of unknown function (D...		Lus10034455 [exp]	19.2	0.7982
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	20.2	0.7982

Compare expression of checked genes

Lus10037541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.