Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011452 [exp] 343 / 5e-120 ND / Lus10037541 [exp] 128 / 1e-36 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10002237 [exp] 100 / 5e-26 ND / Lus10011453 [exp] 84 / 1e-19 ND 36 / 0.008 Lus10025782 [exp] 86 / 2e-19 ND / Lus10037540 [exp] 84 / 2e-19 ND 40 / 7e-04 Lus10025781 [exp] 71 / 7e-15 ND / Lus10038294 [exp] 72 / 8e-15 ND 42 / 4e-04 Lus10025807 [exp] 72 / 2e-14 ND 39 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037542 pacid=23167207 polypeptide=Lus10037542 locus=Lus10037542.g ID=Lus10037542.BGIv1.0 annot-version=v1.0 ATGGATCATAAGCTCTTGATGAAGATGATTACCCTAATCACCTTATCTTACATGTGTTCATCGATCTCAGCTCAAACCCCAGCCCCGTCTCCTTCGATGT CTACGTCGTCGCCATCGACATCTAATTACAAGTACGACACACTCACGGACCTGATGTGTGCACATTACGACCCGAAAGCCACAATGGAATCCGTGAACAA CGACCCGGCCATCAAGGAGATATGCGACGCAACGGAGAAGCCAGCCGACTGCCTCGACTTCTTGGGGAACTCGCCCAAGGCCAACCCCGTGTTCGCCATC CAGGCCGACGTGGACACCCTCAAGACGTTCCTCACCGAAGCCTCCCAGGGCGCCTCAGGGACCCCGCCCCCGGACGTGAAGGAGAGCTTCGAAACGTGCG TCCGTAACTACAACGAGGTGGCCAACAAGCTGACCGAGGTCACTGCGTCCTGCGCGGTGTGCACGCAGAGGAACGGGAAGTGCCCGCCGCAGGAAGCCAC CAAGATCCCCACCGCGCTGAACGATTCGCTGGCCGGGCTTGGGTTGTGTGGTAAGGCGTTGGATGCTACGACGGCGAAGTGTAAGAGGTGGCTGGTGAAT ATTAACGTTGGCGCGACGGAGAGCGTCACGAAAATCCTTGAAGTTGCAAAGAAAATGAACTAA
AA sequence Show only first row Show all	>Lus10037542 pacid=23167207 polypeptide=Lus10037542 locus=Lus10037542.g ID=Lus10037542.BGIv1.0 annot-version=v1.0 MDHKLLMKMITLITLSYMCSSISAQTPAPSPSMSTSSPSTSNYKYDTLTDLMCAHYDPKATMESVNNDPAIKEICDATEKPADCLDFLGNSPKANPVFAI QADVDTLKTFLTEASQGASGTPPPDVKESFETCVRNYNEVANKLTEVTASCAVCTQRNGKCPPQEATKIPTALNDSLAGLGLCGKALDATTAKCKRWLVN INVGATESVTKILEVAKKMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037542 [exp]	0	1
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10019858 [exp]	1.0	0.6615
AT3G47110			Leucine-rich repeat protein ki...		Lus10030854 [exp]	4.6	0.6221
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	10.6	0.6350
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	18.1	0.6175
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	18.6	0.6107
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	18.8	0.6013
					Lus10019699 [exp]	24.8	0.5768
					Lus10039435 [exp]	25.0	0.5742
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	26.9	0.6020
					Lus10007991 [exp]	28.6	0.5893

Compare expression of checked genes

Lus10037542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.