Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79900 378 / 2e-132 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT5G46800 127 / 2e-34 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT2G33820 109 / 1e-27 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT1G34065 97 / 7e-23 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G01100 92 / 6e-21 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G25380 82 / 2e-17 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT5G01340 81 / 2e-17 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT4G11440 81 / 6e-17 Mitochondrial substrate carrier family protein (.1) AT4G32400 81 / 6e-17 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G42130 79 / 2e-16 AtMfl1 MitoFerrinLike1, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011451 [exp] 547 / 0 AT1G79900 410 / 4e-145 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Lus10000906 [exp] 137 / 4e-38 AT5G46800 482 / 1e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10004565 [exp] 134 / 3e-37 AT5G46800 481 / 2e-173 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Lus10015420 [exp] 94 / 5e-22 AT2G33820 415 / 7e-147 Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 87 / 3e-19 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10006812 [exp] 87 / 4e-19 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10032365 [exp] 86 / 1e-18 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 86 / 1e-18 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10030076 [exp] 85 / 2e-18 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053900 [exp] 437 / 1e-155 AT1G79900 419 / 2e-148 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 437 / 1e-155 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.001G142600 [exp] 135 / 2e-37 AT5G46800 434 / 1e-154 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.003G091500 [exp] 134 / 3e-37 AT5G46800 443 / 4e-158 A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) Potri.004G046801 [exp] 112 / 6e-29 AT2G33820 453 / 4e-162 Mitochondrial substrate carrier family protein (.1) Potri.011G056000 [exp] 107 / 8e-27 AT2G33820 460 / 9e-165 Mitochondrial substrate carrier family protein (.1) Potri.001G094100 [exp] 92 / 3e-21 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 91 / 1e-20 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G252100 [exp] 91 / 2e-20 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 90 / 3e-20 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10037544 pacid=23167011 polypeptide=Lus10037544 locus=Lus10037544.g ID=Lus10037544.BGIv1.0 annot-version=v1.0 ATGGATTTCTGGCCTGAGTTCCTCGCCAGCAGTTGGGGGAGAGAGTTTGTCGCCGGCGGGTGCGGTGGCACCGCCGGTATAATCGCTGGTTACCCACTTG ACACCTTGCGTATTCGTCAACAACAGACCACCACCCCCCATTCTGGATCTTCCTCCTCCTCTGCCTTCGGCATTCTTCGCCGGGTTGTTGCCGCGGATGG CCCTTCTGCTCTTTACAGAGGCATGGGCGCCCCTCTAGCCTCCGTCACCTTCCAGAATGCGATGGTATTCCAGATCTACGCAATACTATCTCGAGCATTC GACCCGCCAGCATCACGAACTGATCCACCTTCGTACAAAGGCGTGGCGCTAGGAGGAGTCGGAACAGGAGCACTCCAGAGCATCTTGCTATCCCCAGTGG AGCTCCTCAAGATTCGCCTACAGCTCCAGGAACCAGGAAAATCCTGTAAAGGTCCAGTCAGCGTTGCCAAGTTCATAATAAGAACAGAAGGTATCAAAGG CATGTACAGAGGGTTCGCAATCACTGCACTTAGAGACGCACCTTCGCATGGAGTCTACTTCTTTACGTACGAGTTCATGAGGGAGCAGTTTCACCCTGGA TGCAGGAAGAGCGGCCAAGAGAGTTTGAGGACCATGCTTTTCGCCGGAGGGCTCGCCGGAGTTGCCAGCTGGGTGTGTTGCTACCCGCTGGACGTTGTCA AGACTAGATTACAAGCACAGACTCCGTCTTCTCCTAATCCCTATAGAGGGATATTGGATTGCTTGACTAGGAGCGTCAGGAGTGAAGGCTACAGCGTGCT TTGGAGAGGTCTGGGGACTGCTGTTACGAGGGCCTTTGTGGTGAATGGTGCTGTGTTTACTGCATATGAAACAGCACTGAGGTGTTTCTTCAACAATGGA GGAGACAACATTCATACAGAGAACATTTAG
AA sequence Show only first row Show all	>Lus10037544 pacid=23167011 polypeptide=Lus10037544 locus=Lus10037544.g ID=Lus10037544.BGIv1.0 annot-version=v1.0 MDFWPEFLASSWGREFVAGGCGGTAGIIAGYPLDTLRIRQQQTTTPHSGSSSSSAFGILRRVVAADGPSALYRGMGAPLASVTFQNAMVFQIYAILSRAF DPPASRTDPPSYKGVALGGVGTGALQSILLSPVELLKIRLQLQEPGKSCKGPVSVAKFIIRTEGIKGMYRGFAITALRDAPSHGVYFFTYEFMREQFHPG CRKSGQESLRTMLFAGGLAGVASWVCCYPLDVVKTRLQAQTPSSPNPYRGILDCLTRSVRSEGYSVLWRGLGTAVTRAFVVNGAVFTAYETALRCFFNNG GDNIHTENI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Lus10037544 [exp]	0	1
AT4G16400			unknown protein		Lus10039068 [exp]	8.7	0.8754
AT5G46530			AWPM-19-like family protein (....		Lus10015255 [exp]	14.0	0.8408
AT1G23530			unknown protein		Lus10030608 [exp]	19.0	0.8590
AT4G39810			Polynucleotidyl transferase, r...		Lus10016807 [exp]	20.1	0.8275
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	20.2	0.8587
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	25.9	0.8415
AT1G27170			transmembrane receptors;ATP bi...		Lus10032101 [exp]	29.1	0.8277
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	30.7	0.8353
AT1G14730			Cytochrome b561/ferric reducta...		Lus10019135 [exp]	33.9	0.8394
AT2G36650			unknown protein		Lus10023883 [exp]	36.9	0.8357

Compare expression of checked genes

Lus10037544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.