Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16050 370 / 3e-130 A37, ATPDX1.2 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) AT5G01410 329 / 6e-114 PDX1, ATPDX1.3, RSR4 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) AT2G38230 311 / 9e-107 ATPDX1.1 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.1, pyridoxine biosynthesis 1.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011450 [exp] 479 / 3e-174 AT3G16050 372 / 9e-131 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Lus10038318 [exp] 328 / 1e-113 AT5G01410 578 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10004812 [exp] 327 / 7e-113 AT5G01410 592 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10036181 [exp] 322 / 4e-111 AT5G01410 566 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10002486 [exp] 272 / 5e-93 AT5G01410 395 / 1e-140 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182100 [exp] 391 / 1e-138 AT3G16050 483 / 9e-174 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Potri.016G116400 [exp] 335 / 2e-116 AT5G01410 532 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.006G100500 [exp] 331 / 1e-114 AT5G01410 538 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01680 [flax] [poplar] SOR_SNZ SOR/SNZ family
Representative CDS sequence Show only first row Show all	>Lus10037545 pacid=23167249 polypeptide=Lus10037545 locus=Lus10037545.g ID=Lus10037545.BGIv1.0 annot-version=v1.0 ATGATCTCGGAGCCGACAAGTGGGAGAGGCGGGATTCACCGGATGCCCGATCCATCTCTGGTGAAGGAGATCAAGCGCTCGGTTTCAATCCCTGTCCTGG CTCGTGTCCGCGTCGGACATTTCGTTGAAGCTCAGATACTGGAAGCAATCGACGTCGATTACATCGATGAGAGTGAAGTTCTTGCTCCGGCTGACGAGGA CCACTTCATCAACAAGCACAACTTCGGGGTGCCGTTCGTCTGCGGCTGCCGCAGCTTGGGAGAAGCGCTGCGGAGGGTGAGGGAAGGAGCGGCAATGATC AGTGCACAAGGGGAGACGGTGGAAGCGACTGGAAACATAGCTCAGACGGTGAGGAATGTGAGGAGCGTGATGGGAGACATCAGGATCTTAAACAACATGG ATGAGGACGAGGTGTTTGCGTTTGCTAAGAAGATCGCCGCGCCGTATGATCTGGTGGCCCAGACGAAGCAGATGGGGAGGCTGCCTGTTGTGATGTTTGC TGGTGGTGGGATCGTGACGCCTGCTGATGCTGCTCTGATGATGCAGTTAGGATGTGATGGTGTTTTTGTTGGGAATGAGGTCTTTGATGGCTGTGATGAC CCTTACAAACAAGTTAGAGGGATAATGCAGGCGGTTAGGCATTATAATGATCCTCATGTCTTGGTGGAGAGTAGCAGCTCTGGACATGAGGATGTAATGG CTCAACTCAATCTCAGTGAAGCCAGGATCGAGCAGTGA
AA sequence Show only first row Show all	>Lus10037545 pacid=23167249 polypeptide=Lus10037545 locus=Lus10037545.g ID=Lus10037545.BGIv1.0 annot-version=v1.0 MISEPTSGRGGIHRMPDPSLVKEIKRSVSIPVLARVRVGHFVEAQILEAIDVDYIDESEVLAPADEDHFINKHNFGVPFVCGCRSLGEALRRVREGAAMI SAQGETVEATGNIAQTVRNVRSVMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQMGRLPVVMFAGGGIVTPADAALMMQLGCDGVFVGNEVFDGCDD PYKQVRGIMQAVRHYNDPHVLVESSSSGHEDVMAQLNLSEARIEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10037545 [exp]	0	1
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	3.0	0.9543
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	3.2	0.9663
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	3.2	0.9689
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10006020 [exp]	3.9	0.9381
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	4.9	0.9657
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10029455 [exp]	5.3	0.9623
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Lus10031730 [exp]	5.5	0.9620
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	5.7	0.9557
AT2G15320			Leucine-rich repeat (LRR) fami...		Lus10002822 [exp]	6.2	0.9450
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	6.3	0.9249

Compare expression of checked genes

Lus10037545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.