Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16060 901 / 0 ATP binding microtubule motor family protein (.1) AT3G16630 543 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G18550 189 / 1e-50 ATP binding microtubule motor family protein (.1) AT3G49650 177 / 2e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 172 / 3e-44 ATP binding microtubule motor family protein (.1) AT2G28620 169 / 2e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60930 169 / 2e-43 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 165 / 3e-42 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 163 / 2e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G27550 161 / 4e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011449 [exp] 1242 / 0 AT3G16060 983 / 0.0 ATP binding microtubule motor family protein (.1) Lus10002876 [exp] 542 / 0 AT3G16630 1127 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023103 [exp] 542 / 0 AT3G16630 1121 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019245 [exp] 196 / 3e-53 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 195 / 4e-52 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009073 [exp] 167 / 1e-42 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 167 / 1e-42 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10025304 [exp] 167 / 1e-42 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10000392 [exp] 166 / 4e-42 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G053800 [exp] 1014 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G182300 [exp] 1010 / 0 AT3G16060 990 / 0.0 ATP binding microtubule motor family protein (.1) Potri.018G079800 [exp] 707 / 0 AT3G16060 755 / 0.0 ATP binding microtubule motor family protein (.1) Potri.008G221400 [exp] 548 / 0 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G013500 [exp] 543 / 0 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G223000 [exp] 366 / 3e-119 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G058400 [exp] 190 / 9e-51 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 173 / 9e-45 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 167 / 1e-42 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 165 / 3e-42 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10037546 pacid=23167130 polypeptide=Lus10037546 locus=Lus10037546.g ID=Lus10037546.BGIv1.0 annot-version=v1.0 ATGGGACGGCAGGGACAGAGATCTGGAGCTGCTGCGACGGTGCACCATCAGAGACAGTACTCTGATCACTTCGTGGATTCTTCCTCCGCCAATTCACCAT CCAACGGCCGATGGCTTCAGTCTGCTGGTCTCCAGCACCTTCACAACTTCTCCTCCTCTACTACTTCCAATTCCTCTTCCTCCATTCCTGCTCTTCAGCT GTTAGTCGTTGACTTGGGCTTACGTAATGTGAAGCAGGATTACAATTTCTATGGCGGCGGCGGAGGAGGACTAGGGCAGGGGACGAGGATGTACCGAAAT GCACAGAGGGGATTTAATGGGCAAGATGAGTTCTACACAGAGCCGTCTACACCTCCAGTCGGTTCAAGGCATACAACACAGATGAAGAGCCGGGAAGATT CTCCAACTGAGTTCAGTCCTGGGCTATTGGATCTTCACTCGTTTGACACCGAGTTGCTTCCTGAGTTGCCTGTTCCTAGCATGTATGATGGATCTTCTCT GTTTCGCCCTGGTCGAGGAAGAAGCTTCGATGACTCCGAGCCATACTTTTCAAGCAAGCAAGCTGCTCGAGCTCCTGCTGTACCAGATACCAATGTCCTG AAAAGTTTTGCAGCTGATAAGGAGAAAGCCAGTTCTGTTGCAAAGATCAAAGTGGTGGTTCGTAAGAGACCACTGAACAAGAAGGAGCTTGCAAAAAATG AAGAGGATATAATTGACACGGATTGCAATTCACTAACGGTTCACGAGACTAAACTTAAGGTTGACCTAACGGAATACGTTGAGAAGCATGACTTTGTCTT TGATGCAGTACTAAATGAGGAGGTCTCAAATGATGAGGTGTATCATGAGACAGTTGAACCGATAGTCCCAATAATTTTTCAACGCACTAAAGCTACTTGC TTTGCATATGGTCAAACAGGAAGTGGAAAAACTTATACCATGAAGCCACTTCCTCTCAGAGCATCACGAGATATATTGAGGTTAATGCAACATACTTACA GAAACCAAGGGTTTCAGCTGTTTGTCAGTTTCTTTGAAATATATGGTGGGAAGTTATTTGATCTCCTCGGTGAAAGGAAGAAATTGTGCATGAGGGAAGA TGGCAAGCAGCAAGTTTGTATCGTCGGCCTGCAGGAGTACAGAGTATCCGATGTAGAGGCAATAAAAGAACTTATCGAGAAAGGCAGGTCCACAAGAAGG ACTGGGACAACAGGTGCAAATGAGGAATCCTCTCGTTCACATGCCATATTACAACTTGCTATCAAGAAGTCGGTTGAAGGAAATGAAACAAAGCCTCCAC GTCTGGTTGGGAAGCTTTCCTTTATAGATCTGGCTGGAAGTGAACGAGGTGCAGATACTACAGATAATGATAAACAGACAAGGATGGAGGGTGCAGAGAT CAACAAGAGTTTGCTTGCATTAAAAGAGTGTATTAGGGCTCTTGACAATGACAAGAGTCATATTCCTTTTAGAGGCAGCAAGTTAACTGAGGTTCTACGA GACTCCTTCGTCGGGAATTCTCGTACCGTAATGATATCATGCATTTCCCCAAGCTCGGGATCGTGCGAGCATACGCTTAACACATTGAGATATGCTGACA GAGTGAAGAGTCTGTCCAAAGGAAACAACGCGTCCAAGAAAGACGTCATGTCTTCAACCATAAACTTGAAAGAGTCTACTGCCGTGCCCTTGTCATCGAT CTTACCAGCTGGATCGTCCCCGGACGATGATGCAACTGATGGATGGGCCGATCAAGATGAAGGAGATGATTTTGAGGAGTTGGAGGATTATGAACAAGAG AAACTGGTGCGGAGAGAGAATGGAAAGCTTGAAGCATACAATCCACCCGCCTTGGAGGACAAGTTTCGGAAATCCATTGTCCCGACAAAATTCAAGGAAT TACCTAAAGCTAGTCTGAAGAAGTCGGATTCCGACGAGGATTTAAGCTCCCTACTACAGGAAGAGGAAGATCTCGTAGGTGCCCACAGGAAGCTTGTGGA GGAGACCATGAATATCGTTAGAGAGGAGATGAACCTGTTGGTAGAAGCAGACCAACCAGGGAACCAGCTAGATGATTACGTGACTCGGTTGAACGTGATC CTTTCACAGAAGGCTGCCGGTATACTGCAGCTACAGAATCGGCTGGCGCATTTCCAGAAGCGGCTTAGGGATCACAATGTGTTGGTCTCATCCTCCGGCT ATTAA
AA sequence Show only first row Show all	>Lus10037546 pacid=23167130 polypeptide=Lus10037546 locus=Lus10037546.g ID=Lus10037546.BGIv1.0 annot-version=v1.0 MGRQGQRSGAAATVHHQRQYSDHFVDSSSANSPSNGRWLQSAGLQHLHNFSSSTTSNSSSSIPALQLLVVDLGLRNVKQDYNFYGGGGGGLGQGTRMYRN AQRGFNGQDEFYTEPSTPPVGSRHTTQMKSREDSPTEFSPGLLDLHSFDTELLPELPVPSMYDGSSLFRPGRGRSFDDSEPYFSSKQAARAPAVPDTNVL KSFAADKEKASSVAKIKVVVRKRPLNKKELAKNEEDIIDTDCNSLTVHETKLKVDLTEYVEKHDFVFDAVLNEEVSNDEVYHETVEPIVPIIFQRTKATC FAYGQTGSGKTYTMKPLPLRASRDILRLMQHTYRNQGFQLFVSFFEIYGGKLFDLLGERKKLCMREDGKQQVCIVGLQEYRVSDVEAIKELIEKGRSTRR TGTTGANEESSRSHAILQLAIKKSVEGNETKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDKSHIPFRGSKLTEVLR DSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNASKKDVMSSTINLKESTAVPLSSILPAGSSPDDDATDGWADQDEGDDFEELEDYEQE KLVRRENGKLEAYNPPALEDKFRKSIVPTKFKELPKASLKKSDSDEDLSSLLQEEEDLVGAHRKLVEETMNIVREEMNLLVEADQPGNQLDDYVTRLNVI LSQKAAGILQLQNRLAHFQKRLRDHNVLVSSSGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	0	1
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	2.0	0.8917
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	3.9	0.8915
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	4.0	0.8901
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	4.1	0.9059
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	4.9	0.8744
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	5.5	0.8720
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	5.5	0.8778
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015777 [exp]	6.0	0.8820
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10032193 [exp]	7.2	0.8459
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	7.4	0.8746

Compare expression of checked genes

Lus10037546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.