Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15260 77 / 2e-17 unknown protein AT3G16070 73 / 7e-16 unknown protein AT3G24535 47 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011448 [exp] 342 / 7e-120 AT1G15260 89 / 9e-22 unknown protein Lus10035880 [exp] 146 / 3e-43 AT1G15260 94 / 4e-24 unknown protein Lus10025783 [exp] 101 / 8e-26 AT1G15260 97 / 3e-25 unknown protein Lus10023639 [exp] 86 / 1e-20 AT3G24535 72 / 4e-16 unknown protein Lus10034910 [exp] 85 / 6e-20 AT3G16070 72 / 3e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182500 [exp] 125 / 1e-35 AT3G16070 97 / 2e-25 unknown protein Potri.003G053600 [exp] 123 / 2e-34 AT1G15260 100 / 1e-26 unknown protein Potri.018G080001 [exp] 97 / 3e-24 AT1G15260 52 / 3e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037547 pacid=23167321 polypeptide=Lus10037547 locus=Lus10037547.g ID=Lus10037547.BGIv1.0 annot-version=v1.0 ATGCAGATGAGAGAGTCCATTGGAAAGACCAAAGTCTTCTTCCAAGAGACTCTCCAAGATCTCAAGTCCCTTTTCCACCAAACCACTTTGATCACTAACC CTTTCTCTTATTGGAGGAGCAACTGCAAGAATCCAGATCACACCATTGCTGATCATGAGTACTACACCACCTTCTGCAATGAACTCGAGTCCGATCTCCA AAAGGTCGCGAAGCTCAACCCCACCACCATGGTCACCACCACCAATACCGACGGGTCCGGGGGGATGTTGCCTCGTGCCCGTGGCAAGCCTCCATCCAGG ACTAGAACAACAAATTTAGGTTCTGTGTCACTTTCGATCCAAGACCCGTCCCTGACGACGACCACCACCACTAGCAAAGTGCCAGCTGTCCCGAAAGAGT CAGCACCAAACAGAGAAATAGCTGATCAAATGAAGAACATCAAGAGGAAGAAGAAAACCCAGAAAAACCAGAAGAAAGAACATCAAGTGAGCTATTATGT GTTGGCAAGGAAGATCAAAGAACTGGAGATGATGGATGTGAGCGACGTGGAGCATGTTCTTGATGTTGAGGAAGCTCTCCATTACTATTCCAGACTGAAG AGCCCTGCTTATCTCGACATTGTCGACAAGTTCTTCACCGATATGTACCACGAGATCTCCTTCATCCCTCCTCCGAGTTATTCCCAGGCTTCTGTTTCTG CTAACAGCTCAAGAAGGAGGCTTTCTTCTTTCAGATTGTGA
AA sequence Show only first row Show all	>Lus10037547 pacid=23167321 polypeptide=Lus10037547 locus=Lus10037547.g ID=Lus10037547.BGIv1.0 annot-version=v1.0 MQMRESIGKTKVFFQETLQDLKSLFHQTTLITNPFSYWRSNCKNPDHTIADHEYYTTFCNELESDLQKVAKLNPTTMVTTTNTDGSGGMLPRARGKPPSR TRTTNLGSVSLSIQDPSLTTTTTTSKVPAVPKESAPNREIADQMKNIKRKKKTQKNQKKEHQVSYYVLARKIKELEMMDVSDVEHVLDVEEALHYYSRLK SPAYLDIVDKFFTDMYHEISFIPPPSYSQASVSANSSRRRLSSFRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15260			unknown protein		Lus10037547 [exp]	0	1
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	2.0	0.9763
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	2.4	0.9685
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	3.9	0.9564
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	4.6	0.9671
					Lus10041394 [exp]	4.9	0.9540
					Lus10010481 [exp]	6.3	0.9664
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	6.5	0.9199
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	9.5	0.9427
AT1G23070			Protein of unknown function (D...		Lus10036614 [exp]	12.0	0.9362
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10036665 [exp]	12.0	0.9211

Compare expression of checked genes

Lus10037547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.