Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79890 612 / 0 RAD3-like DNA-binding helicase protein (.1) AT1G20720 100 / 3e-21 RAD3-like DNA-binding helicase protein (.1) AT1G79950 97 / 2e-20 RAD3-like DNA-binding helicase protein (.1) AT1G20750 88 / 1e-17 RAD3-like DNA-binding helicase protein (.1) AT1G03190 74 / 2e-13 ATXPD, UVH6 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2) AT1G09995 56 / 2e-09 DNA repair DEAD helicase RAD3/XP-D subfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011447 [exp] 1153 / 0 AT1G79890 1036 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10037532 [exp] 92 / 6e-19 AT1G79950 1010 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10011460 [exp] 92 / 7e-19 AT1G79950 1049 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10012249 [exp] 82 / 9e-16 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10016027 [exp] 78 / 3e-14 AT1G20720 955 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10014662 [exp] 77 / 3e-14 AT1G03190 1402 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182600 [exp] 795 / 0 AT1G79890 947 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.001G180200 [exp] 100 / 3e-21 AT1G79950 1042 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G008700 [exp] 100 / 3e-21 AT1G20720 1164 / 0.0 RAD3-like DNA-binding helicase protein (.1) Potri.002G054000 [exp] 77 / 3e-14 AT1G03190 1410 / 0.0 ULTRAVIOLET HYPERSENSITIVE 6, ARABIDOPSIS THALIANA XERODERMA PIGMENTOSUM GROUP D, RAD3-like DNA-binding helicase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06733 [flax] [poplar] DEAD_2 DEAD_2
Representative CDS sequence Show only first row Show all	>Lus10037548 pacid=23167217 polypeptide=Lus10037548 locus=Lus10037548.g ID=Lus10037548.BGIv1.0 annot-version=v1.0 ATGAGGTCTCTCTATCGCTACTTGGATCAGGGCGGCGTCTCCATGCTTGAAAGCCCCACCGGTGAGAAACACTCTGATTCGGCGAAACTGATTTGTTCAA GTTTCAACTCCGTCCAATGGGTGTTGGATCGGAGGGAGAAGGAGAAACTAAAAACTGAAGTGGAGGTTCCGCATAGGAAGGATGCCGGATATGATTGGAT GAGAAGTTTCGTCCCTAATAAGGATGCTGATTCCCCTGTGAAGAAGGAAGTTAGTAAGACGAAATTCGGACTGGTCAAATGTAATAACAAGAGGACGACT GACGAGAGTTCAAAGAACGTGAGGAAGGAAGAGAATGATACTTTTCTGAGGGTATGTGATAATGAGGAAGTGTTTGACTCGAACGATGCTGAATTTCTGT TGGAAGAGTATGAAAGTGAAGATGAAGGATCTCTAAAATCAAAGAGGAAAGCTGGTAGAGATGTTACTTTGTCGAGTGACAATGGATCTGATGAGGTGGA AGGGGAGGAGAAAGAGTTCAAGATTTCTTTTGTAGCAGGACATATTCACAGCTTTCGCAAGGTTTTGAAACTTGGGAACTCTGGTTGCATCAACGAACGA TGCTTGGATCTTCAAAAGAAGAGGAAAGATCAGGTTTCTAAGTCAAGCATGGTTCCATCAGCTGATCTTGTGGTTCTCCTTTACCAGTCTTTGTTATCGA AATCGTCCCGAGAATCACTTGGTCTACATTTGAAGAAGAGTATAGTGATAATAGATGAGGCTCATAATCTAGCAGATTCCTTAATCAACATGTATGATGC AAAAGTTACTTCTTCGCAGTTGGAGCTTGTGTATGCTCACGTTGAGAAGTACTTCACAAGATTCCGGAATCTCTTAGGACCTGGCAACCGAAGATATATC CAAACTCTGATGGTTCTTACTAGAGCATTTTTTAGATCTTTATGTGGGGAGCAAGATGCTGTCAACTCAAAGGACATCTTTCACACTTCTATAGCTATCA ATGAGTTTTTATTCAAAGAAAATATCGATAACATTAACTTGGTTAAGCTGCTGCAGTATCTAAAAGAGAGCAATCTAGTTTACAAGGTAAGTGGATGTGG AGAAAAAGTCACCGCCTTGCATAGTGAAACCAGTGATTTCCTTAAGGATGGAAGCAGTCTTTCCAGTTTCAGGGCACTAGTGGACATGTTGGTGTCACTA ACAAATAACAATGGCGATGGTCGGATAATAATTTCTCGAGTCAGATCAACATCCGAAAAACCGCAAGGAGGAGTCTTGAAATATGTAATGCTCACAGGGG AAAAGATTTTCTCAGAGATTGTTGACGAGGCTCATGCTGTTATAATGGCCGGAGGAACCCTACAACCGATTGAAGAAACGAGGGAAAGACTCTTCCCACG GCTACCACTAGATGAGCTGCATTTCTTTTCATGTGGCCATATTGTCCCTCCTCAAAGTATTTTACCTATTGCAGTTTCAAAGGGTCCTTCAGGTCAAGCT TTAGATTTCAGTTACAGCTCAAGAAGCTCATCAACCACGTTTCCTAATCTCGGTTTACAGATAAACGAGCTTGGACTCTTGCTCTGCAACTTGGTCACAG TCGCTCCTGAAGGAATCGTTGTGTTCTTTTCATCCTTCGAGGACGAAGAACAAGTGCACGGGGCCTGGAAGTCATCGGGTATCCTCGAAAGGATGTCGAG GAAGAAACGCATTTTTCGAGAACCGAGGAAGAATTCTGACGTAGAACTAATTCTGAATGAATACATGGACACCATTTTGAAGGTATCAACAGATGCAGGA GCTCACAATGGGGCAATGCTTCTAGCTGTAGTTGGTGGTAAAGTATCTGAAGGCATCAACTTCAGCGACGGGATGGGACGATGTGTTGTAATGGTTGGAT TACCGTATCCGAGTCCATCCGACATTGATTTAATGGAGAGGGTGAAGTACATTGAGAGCCTAGGAGATCAAAATCATGCCAAGGTTTGTAATTGGGAAGA TGAACATTATACAGGGATGGCATCCTTCAGCATATTAAGAAGTTGCAGGGGCAGAGGGAAAGAGTACTATGAAAACCTCTGCATGAAAGCTGTCAATCAA TCCATCGGTAAGTGGACAGGATCTATGTTTAAGGGTGATTTGCATGTGAAAGACTATGCGGCAGTGTTGTTGGTGGATAGGCGTTATGGAGCATCATCAG ACTCTTTGAAAAGAAGTGCTTCTCACCCAACTAACAAGCTCCCAAATTGGATCAAAGATCGGCCTTGTTTCTGGAACAAGCAACTATGGAGAAGTTCATA G
AA sequence Show only first row Show all	>Lus10037548 pacid=23167217 polypeptide=Lus10037548 locus=Lus10037548.g ID=Lus10037548.BGIv1.0 annot-version=v1.0 MRSLYRYLDQGGVSMLESPTGEKHSDSAKLICSSFNSVQWVLDRREKEKLKTEVEVPHRKDAGYDWMRSFVPNKDADSPVKKEVSKTKFGLVKCNNKRTT DESSKNVRKEENDTFLRVCDNEEVFDSNDAEFLLEEYESEDEGSLKSKRKAGRDVTLSSDNGSDEVEGEEKEFKISFVAGHIHSFRKVLKLGNSGCINER CLDLQKKRKDQVSKSSMVPSADLVVLLYQSLLSKSSRESLGLHLKKSIVIIDEAHNLADSLINMYDAKVTSSQLELVYAHVEKYFTRFRNLLGPGNRRYI QTLMVLTRAFFRSLCGEQDAVNSKDIFHTSIAINEFLFKENIDNINLVKLLQYLKESNLVYKVSGCGEKVTALHSETSDFLKDGSSLSSFRALVDMLVSL TNNNGDGRIIISRVRSTSEKPQGGVLKYVMLTGEKIFSEIVDEAHAVIMAGGTLQPIEETRERLFPRLPLDELHFFSCGHIVPPQSILPIAVSKGPSGQA LDFSYSSRSSSTTFPNLGLQINELGLLLCNLVTVAPEGIVVFFSSFEDEEQVHGAWKSSGILERMSRKKRIFREPRKNSDVELILNEYMDTILKVSTDAG AHNGAMLLAVVGGKVSEGINFSDGMGRCVVMVGLPYPSPSDIDLMERVKYIESLGDQNHAKVCNWEDEHYTGMASFSILRSCRGRGKEYYENLCMKAVNQ SIGKWTGSMFKGDLHVKDYAAVLLVDRRYGASSDSLKRSASHPTNKLPNWIKDRPCFWNKQLWRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	0	1
AT3G63480			ATP binding microtubule motor ...		Lus10035344 [exp]	2.4	0.9451
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	2.8	0.9481
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	4.5	0.9542
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	5.3	0.9448
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	6.5	0.9345
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10006315 [exp]	7.4	0.8900
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	9.5	0.9054
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	9.5	0.9409
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	10.4	0.9269
AT5G22820			ARM repeat superfamily protein...		Lus10005366 [exp]	10.4	0.9030

Compare expression of checked genes

Lus10037548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.