Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65210 444 / 3e-155 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 436 / 4e-152 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G77920 345 / 4e-116 bZIP bZIP transcription factor family protein (.1) AT1G22070 342 / 7e-115 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 291 / 1e-95 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT3G12250 286 / 1e-93 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G68640 290 / 2e-93 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G06960 279 / 7e-91 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G08320 275 / 4e-89 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 274 / 9e-88 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011445 [exp] 733 / 0 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10035873 [exp] 626 / 0 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10025789 [exp] 562 / 0 AT5G65210 402 / 4e-140 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10018009 [exp] 366 / 2e-124 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10042005 [exp] 365 / 7e-124 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10009055 [exp] 360 / 5e-122 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10031349 [exp] 347 / 9e-117 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10024140 [exp] 306 / 2e-101 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 305 / 7e-101 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G085700 [exp] 500 / 3e-177 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 478 / 1e-168 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G170500 [exp] 388 / 3e-133 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 377 / 8e-129 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G079900 [exp] 315 / 3e-106 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.016G036500 [exp] 304 / 8e-99 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.001G029800 [exp] 302 / 4e-98 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 300 / 1e-97 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.003G194600 [exp] 298 / 2e-96 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 296 / 8e-96 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10037550 pacid=23167053 polypeptide=Lus10037550 locus=Lus10037550.g ID=Lus10037550.BGIv1.0 annot-version=v1.0 ATGGCCATGCATGGATCCCGATGTTATGTGATCCTTTTTTTGTTTGGATTGGAAATCAGATCGTTTCCGGATGCTGATTCTTCTTCTTCTTCCTGTTCCA AGGTTTTTGAATCGCTAACTATATTCTCGCTGCTCGGATCTCTGGTTTTGGTGGCGGGAAACTTCCTTTCTGCCGTGCTTGATGGTTTCTGTTTGAAATC GAAAGGTACACGACTCGCAATCAGTGAAACAACCATGAACTCGCCTACACAATTTGTGGCTTTAGGAGGAGGGATGGAGATGTATGAACATGTGCACCAG CTCAGTATGTGGGGAGAAAGTTTGTTCAAGAGTAACGGAAGTCCGAATGCACTGACATCAATACTCATACCGAATACATCCCCGTCCTTGTTCATATCAC CTGATATAAAGTTTGACAATCAGTCCGAAGATACTTCACATGGTACTCCTGGAGTTCTTACTAATTATGAACAAGAAGTGACCAAGTCCAGTGAGAAGGT ACAAAGACGTCTTGCCCAGAATCGTGAGGCTGCTCGTAAAAGCCGCATACGTAAAAAGGCATATGTGAAGCAATTAGAATCAAGTCGTTTGAAGTTGATT CAGTTGGAGCAAGAGCTTGACAAAGCCAGACAACAGGGCTCATATATAGACAATGCAGTAGAAGGTAGTAATGTCGGGTTTAACAGTGCCATAAACTCAG GCATTGCAACGTTTGAGATGGAGTATGTAAATTGGTTGGAGGAGCAGCAGAGACATGTTTCCGAACTGAGGACTGCTCTAAACTCCGATATAAGCGACAG AGAAATTCACGTATTCGTAGACGCTAGTTTGAACCACTATTACGAGCTTTTCCGCATGAAGGCAGCTGCTTCAAAGGCTGATGTTTTCTATGTCATGTAT GGCTTATGGAAGTCCTCAGCTGAAAGGTTTTTCCTCTGGATAGGAGGATTTCGCCCTTCGGAACTTATTAAGATTTTAAGGCCTCAGATTGAGCCCTTGG CAGAGCCACAACTTCAGGATATCTGCAATTTGGGACAATTATGCCAGCAAGCAGAAGATGCCCTGTCGCAAGGCATGGAGAGACTTCAGCAGACCCTTGC CCAGAGTGTCGCCGATGGACAATTGGGTGAAGCAAGTTACTCACCCCAGATCGATACGGCCATGGAGAAGCTGGATTCTCTGGTGCGTTTCGTTCGCCAG GCGGATCATCTGCGAAAAGTAGCATTGGTGCAGGTGTCTCAGATCCTGACACCGAGACAGGCAGCTCGAGGATTGCAAGCTCTAGGAGAATACTTCGACA AACTAAGGGCTTTGAGTCAAGTTTGGGAGACCAACGTCCGAGAGCCTTCGTAG
AA sequence Show only first row Show all	>Lus10037550 pacid=23167053 polypeptide=Lus10037550 locus=Lus10037550.g ID=Lus10037550.BGIv1.0 annot-version=v1.0 MAMHGSRCYVILFLFGLEIRSFPDADSSSSSCSKVFESLTIFSLLGSLVLVAGNFLSAVLDGFCLKSKGTRLAISETTMNSPTQFVALGGGMEMYEHVHQ LSMWGESLFKSNGSPNALTSILIPNTSPSLFISPDIKFDNQSEDTSHGTPGVLTNYEQEVTKSSEKVQRRLAQNREAARKSRIRKKAYVKQLESSRLKLI QLEQELDKARQQGSYIDNAVEGSNVGFNSAINSGIATFEMEYVNWLEEQQRHVSELRTALNSDISDREIHVFVDASLNHYYELFRMKAAASKADVFYVMY GLWKSSAERFFLWIGGFRPSELIKILRPQIEPLAEPQLQDICNLGQLCQQAEDALSQGMERLQQTLAQSVADGQLGEASYSPQIDTAMEKLDSLVRFVRQ ADHLRKVALVQVSQILTPRQAARGLQALGEYFDKLRALSQVWETNVREPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	0	1
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	1.4	0.9532
AT2G22730			Major facilitator superfamily ...		Lus10003528 [exp]	2.0	0.9525
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	2.2	0.9643
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	2.4	0.9527
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10002254 [exp]	3.7	0.9431
AT2G24550			unknown protein		Lus10020142 [exp]	4.0	0.9480
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	4.2	0.9500
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	4.5	0.9383
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	5.2	0.9471
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	6.5	0.9489

Compare expression of checked genes

Lus10037550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.