Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 303 / 2e-102 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 278 / 2e-92 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT4G34200 125 / 8e-32 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 123 / 3e-31 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT3G19480 116 / 8e-29 D-3-phosphoglycerate dehydrogenase (.1) AT1G68010 107 / 2e-26 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G72190 97 / 1e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 94 / 1e-21 FDH formate dehydrogenase (.1) AT1G01510 62 / 2e-10 AN ANGUSTIFOLIA, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025795 [exp] 432 / 2e-153 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 427 / 4e-151 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 416 / 7e-147 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 415 / 1e-146 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 290 / 3e-97 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 285 / 5e-95 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10006708 [exp] 266 / 1e-87 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10014133 [exp] 253 / 6e-83 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10011442 [exp] 228 / 3e-75 AT1G79870 117 / 1e-32 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052700 [exp] 434 / 5e-154 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 427 / 1e-151 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 290 / 6e-97 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 289 / 8e-97 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 290 / 1e-96 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 278 / 2e-92 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.014G073500 [exp] 277 / 6e-92 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G119000 [exp] 261 / 6e-86 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G046150 [exp] 151 / 3e-45 AT1G79870 164 / 3e-50 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G122700 [exp] 127 / 8e-33 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10037552 pacid=23167248 polypeptide=Lus10037552 locus=Lus10037552.g ID=Lus10037552.BGIv1.0 annot-version=v1.0 ATGGATTCCATCACCATCCTGATGACGAAACCAATCCTCCCATATCTGCAGCAAGAGCTCGACAGCCGATTCAACGTTCTCAAGCTCTGGAAAATACCAC CAACCACCACTACCGCTGAATTCCTCCAACAGCACAGTGAGGCGATCCGCGCCGTGGTCGTCGACGGCGGCACGGGGCTGACCCAAGAGGTGATGACGGC GCTTCCGAAGATGGAAATCGTCGCCAGCTCCAGCGTTGGGATGGACAAGATCGATTTGGGGAAGTGTAAGGAGAAAGGGATCAGAGTCACCAACACTCCC GACGTTCTCACCGACGACGTCGCCGATCTGGCGATCGGGTTGATTCTTGCTGTGTTGAGGAATATGGCGGCTAGTGATCGGTATGTGAGGAGTGGGCTGT GGATCAAAGGCGAGTTCAAGTTGGGCTCCAAGTTTACAGGCAAGTCAGTCGGGATCGTCGGGCTAGGTAGGATTGGCAAAGCAATAGCTGAGAGAGCCGA GGCATTCGGCTGCCAAATCAGCTACCACTCAAGAACACCAAAGCCAAACACTAAAAACTACAAGTACTACTCCAGCATTGTCGATCTAGCCACTCACTCT GAAATCCTCGTCGTAGCCTGCGCCCTAACCGATGAGACTCGCCACATCATCAACCGCCAGGTCATCGACGCACTGGGCCCACGTGGTGTGCTGATCAACA TCGCTAGGGGCGCGACCGTGGACGAGCCTGAGCTCGTTTCGGCCCTGGTGGAAGGCAGGCTAGGCGGCGCTGGGCTTGATGTGTTCGAGAACGAGCCGAA TGTGCCGGAGGAGATGGTGGGGCTTGAGAATGTTGTGATGTTGCCTCATGTCGGGAGTGGTACTTTGGAGACTAGGAAGGCCATGGCTGACCTTGTGGTG GGGAACTTGGTGGCTCATTTTGAAATGAAAGAGCTTTTGACTCCTGTGGTTTAG
AA sequence Show only first row Show all	>Lus10037552 pacid=23167248 polypeptide=Lus10037552 locus=Lus10037552.g ID=Lus10037552.BGIv1.0 annot-version=v1.0 MDSITILMTKPILPYLQQELDSRFNVLKLWKIPPTTTTAEFLQQHSEAIRAVVVDGGTGLTQEVMTALPKMEIVASSSVGMDKIDLGKCKEKGIRVTNTP DVLTDDVADLAIGLILAVLRNMAASDRYVRSGLWIKGEFKLGSKFTGKSVGIVGLGRIGKAIAERAEAFGCQISYHSRTPKPNTKNYKYYSSIVDLATHS EILVVACALTDETRHIINRQVIDALGPRGVLINIARGATVDEPELVSALVEGRLGGAGLDVFENEPNVPEEMVGLENVVMLPHVGSGTLETRKAMADLVV GNLVAHFEMKELLTPVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	0	1
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	1.0	0.9759
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	2.8	0.9575
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	6.0	0.9364
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	8.5	0.9516
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	9.2	0.9522
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016997 [exp]	9.5	0.9256
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	9.9	0.9408
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	9.9	0.9446
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	10.2	0.9465
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	14.9	0.9407

Compare expression of checked genes

Lus10037552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.