Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79840 819 / 0 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G00730 556 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G21750 551 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 546 / 0 HD PDF2 protodermal factor 2 (.1) AT3G61150 538 / 0 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT1G05230 531 / 1e-179 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT1G73360 442 / 7e-145 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G17920 441 / 7e-145 HD HDG12 homeodomain GLABROUS 12 (.1) AT5G52170 433 / 6e-142 HD HDG7 homeodomain GLABROUS 7 (.1) AT2G32370 424 / 6e-138 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011440 [exp] 1347 / 0 AT1G79840 827 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Lus10006765 [exp] 556 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 553 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 553 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10027175 [exp] 547 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10039667 [exp] 546 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10031321 [exp] 499 / 3e-167 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10036567 [exp] 500 / 1e-166 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10027437 [exp] 459 / 4e-151 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052400 [exp] 978 / 0 AT1G79840 948 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.001G184100 [exp] 951 / 0 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.014G075200 [exp] 602 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 583 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.004G020400 [exp] 566 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.011G025000 [exp] 562 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 561 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.014G152000 [exp] 559 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.012G139300 [exp] 523 / 7e-176 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 521 / 5e-175 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10037554 pacid=23167018 polypeptide=Lus10037554 locus=Lus10037554.g ID=Lus10037554.BGIv1.0 annot-version=v1.0 ATGTCGAACCATAACCAAGCTCACCCTGCTCTCTCCCTCACCCTGGCCGGAATATTCCGCGGCACAGGAAGTACTACTACTAATAATGCAGGAATAGCGG CATGCATTAATGGTGATCAGGTGGAGATTAGCAGCGAGAATTCAGGGGCGGCGATGACGACGAGGAGGTCGAATTCGGACGGTGTAGAGTTTGATCATGA TGATCATGATGATGATGAGGAGGAGGAGGAAGAGAGTAATGTGGAAGATCGGACCAAGAGGAAGAAGAAGAAGAGGAAGAAGTACCATCGCCATACTCCT GATCAAATCCGCGAAATGGAAGCGTTGTTCAAGGAATCGCCGCATCCGGACGAAAAGCAGAGGCAGCAACTGAGCAAGCAGTTGGGGCTAGCGCCACGTC AGGTCAAGTTCTGGTTCCAGAATCGCCGCACCCAAATCAAAGCCATTCAAGAGCGTCACGAGAATTCACTATTGAAGGCCGAGATCGATAAGCTTCGCGA CGACAACAAATTTCTCCGGGACACCATTGCCGCCAATGTCTCTTCCTCCACCGGCGGCGGCTGCCTCAAATGTGGCGGCGGAGATCATCCTCCTCTTTCC TTTACCGATGATAAACACCTCCGCGTCGAGAACGCCAAGCTCAAAGCTGAGGTGGAGAACCTTCGAGTCTTGGTGGAGAAACACGCGCCACTAGCCGGAA CAGGAACTGCGACAACGAGCTCCGAGAGCAGTGACCATCATCAGCACCAAAACCAAGAGAGAATATCGACAACGACGGCCATGTCACTCGATTTCTACTC GAGGGTATTCGGGCTAGAGAAGGCCAAGGTACAAGAAGTCGTCAACCAAGCAATGGAAGAGCTCCAAAAGATGGCCACTGCAAGGGACCCACTCTGGGTC CGAAGTTTCGAGACCGGTCGAGAGATGTTGAACTACGACGAGTATATGAAGCAGTTTGGCGGCGGTGGTTCGAAGACGAATGCAGCGAACGTCGAGGCTT CAAGGGATTGCGGGCTCGTGTTTTTCGAGCTCCATCGGCTGGTTAACTGTTTCATGGATGTGAATCAATGGAAAGAGATGTTTCCATGGTTGATAGCTAA AGCGGTTACTGTGGATGTCATTTGCGAGGGAGATGGTCGAACCGGACATGGCGCAATCCAACTGATGTTTGCAGAGGTTCAAATGCTGACACCAATGGTG CCGACTAGAGAACTATATTTCATGAGGTACTGCAAGCAGCTCAGCGCAGAAGAGTGGGGGATCGTGGACGTCTCCATCGACGAAGTCGAAGAAAACATCG ATGCCTCACTCGACAAGTGCAGGAAGCGCCCCTCTGGGTGCATCATCCATGATCAATCTAATGGACATTGCAAGGTTGTCTGGGTAGAACATCTGGAATG CAAGAAAACGGCAGGGAGTTCAATGTACAGGACCATGGTGAATAGCGGACTAGCCTTCGGTGCGAAGCACTGGCTGTCCGCTCTGCAACTTCAATGCGAG AGGCTTGTGTTCTTCATGGCAACAAATGTTCCTACAAAAGATTCAACAGGTGTTGCGACGTTAGCTGGGAGGAAAAGCATTCTGAGGCTGGCACAACGAA TGACTTCGACCTTTTGCTGCGCAATAGGAGCTTCAAGCTACCGCACCTGGACCAAGGTCACTTCGAAAACAGGGGAGGACATCAGGGTTTCTTCCAGGAA GAACTTCAATGACCCTGGCGAGCCGTTTGGAGTGATTCTGTGTGCTGTTTCTTCGGTTTGGTTGCCAGTGTCTCCTCCTGCACTGTTTGATTTCTTACGT TACGAAGAGACTAGAAATGAGTGGGATATCATGTCAAATGGAGGAGCTGTACAATCGATTGCGAACTTAGCCAAAGGACAAGACAGAGGGAATGCAGTGA CTCTCCAGATGATAAAAGCAGATGAGAATACCACATGGATACTCCAAGATAGCTGCACGAACGCCTATGAATCCATGATAGTATACGCTCCAGTAGATAT TCCTGGAATGAAAACTGTCCTTACTGGATGCGATTCAAGCAACATATCGATTTTACCTTCCGGATTCTCCATCCTCCACGACGGACTAGACTCGAGGCCA CAGGTGATCACTTCCTTGGAAAAGGAGAAAGGATCAGGAGGCTCTTTGCTAACAATGGCATTCCAAATCCTAACGAGTACCGTCCCAGCAGCGAAACTCA CTGCCGACTCGGTGGAGTCTGCTTCTGCACTCGTATCCTGCACATTAAGGAACATTAGAACAAGCTTGGAATGTGAAGAAAGCTGA
AA sequence Show only first row Show all	>Lus10037554 pacid=23167018 polypeptide=Lus10037554 locus=Lus10037554.g ID=Lus10037554.BGIv1.0 annot-version=v1.0 MSNHNQAHPALSLTLAGIFRGTGSTTTNNAGIAACINGDQVEISSENSGAAMTTRRSNSDGVEFDHDDHDDDEEEEEESNVEDRTKRKKKKRKKYHRHTP DQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKAEIDKLRDDNKFLRDTIAANVSSSTGGGCLKCGGGDHPPLS FTDDKHLRVENAKLKAEVENLRVLVEKHAPLAGTGTATTSSESSDHHQHQNQERISTTTAMSLDFYSRVFGLEKAKVQEVVNQAMEELQKMATARDPLWV RSFETGREMLNYDEYMKQFGGGGSKTNAANVEASRDCGLVFFELHRLVNCFMDVNQWKEMFPWLIAKAVTVDVICEGDGRTGHGAIQLMFAEVQMLTPMV PTRELYFMRYCKQLSAEEWGIVDVSIDEVEENIDASLDKCRKRPSGCIIHDQSNGHCKVVWVEHLECKKTAGSSMYRTMVNSGLAFGAKHWLSALQLQCE RLVFFMATNVPTKDSTGVATLAGRKSILRLAQRMTSTFCCAIGASSYRTWTKVTSKTGEDIRVSSRKNFNDPGEPFGVILCAVSSVWLPVSPPALFDFLR YEETRNEWDIMSNGGAVQSIANLAKGQDRGNAVTLQMIKADENTTWILQDSCTNAYESMIVYAPVDIPGMKTVLTGCDSSNISILPSGFSILHDGLDSRP QVITSLEKEKGSGGSLLTMAFQILTSTVPAAKLTADSVESASALVSCTLRNIRTSLECEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10037554 [exp]	0	1
AT4G20040			Pectin lyase-like superfamily ...		Lus10001376 [exp]	5.5	0.7941
AT1G48170			unknown protein		Lus10011844 [exp]	8.5	0.8047
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	9.4	0.7963
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Lus10007495 [exp]	14.1	0.8197
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	21.5	0.7789
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	23.6	0.7797
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	27.1	0.7849
AT5G19090			Heavy metal transport/detoxifi...		Lus10031514 [exp]	29.7	0.7575
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	36.1	0.7557
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	40.4	0.7279

Compare expression of checked genes

Lus10037554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.