Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80550 460 / 3e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 209 / 1e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 166 / 9e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15200 160 / 2e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 149 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 144 / 3e-38 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G80880 136 / 9e-35 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 136 / 1e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 135 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 134 / 7e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011439 [exp] 795 / 0 AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 207 / 3e-60 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031837 [exp] 188 / 6e-54 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 172 / 1e-47 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 159 / 5e-43 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 156 / 4e-42 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041669 [exp] 152 / 1e-40 AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 150 / 5e-40 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 147 / 2e-38 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147200 [exp] 512 / 0 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 222 / 5e-66 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 179 / 2e-50 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 166 / 8e-46 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G066700 [exp] 154 / 4e-41 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 153 / 5e-41 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 148 / 1e-39 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 144 / 3e-37 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 141 / 1e-36 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 140 / 3e-36 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037555 pacid=23167097 polypeptide=Lus10037555 locus=Lus10037555.g ID=Lus10037555.BGIv1.0 annot-version=v1.0 ATGGCCTCTTCGACATTGTTGCGGCGTTTAAATCGCCTTCCCCTCCTCCGTAAATCGGCGGCCCACTCTCTGTCAACAGCTCCCACGCCTCATTCATCCA CGTTCCGCGCCTCGGAGCAGCAGCCGCGGCCGCCTTCTCATATGGACGTGCTTGAGAAGCTGAAGCTTCAGTCCAACGACTGGAAAACCGCTCTGGACTA CTTCACCTTCGTCGAGAATGACCACCGGTTCGCTCACACCACCGAGACATTCAATTGCATGATCGGAATCCTCGGTAAGTTCTTTGAATTCGACCTCTCG TGGCGGTTAATCGAGCGAATGCCGAAGCCGAATCACGCCACATTCCGTGTAATGTTTAAGCGCTATGTGTCCGCTAAACTAGTCCAGGAAGCTTTGCTTG CTTACCAGAGGTCAGCGGAGTTTGGTCTGAGGGACGAGACTTGTTATAGCTATCTTGTGGACGCACTTTGCGAGTACAAGCACGTTAGCGACGCTGAAGA GTTTTTGTTCAGGAAGAAACCGAAACCTAGTGGTGATGATGATGATGATGATGATGATGATGAGATTGCGGTGGTTATGGCGAATTCGACTAAGGTTCAT AACATGATCTTGCGCGGGTGGTTTAAGATGAATCGGTTTGGGAAGTGTAGAGAGTTTTGGGAGGAAATGGATAGGAAAGGAGTGAATAAGGATTTGCATT CTTATTCTATCTACATGGATATAATGTGCAAGAGTGGGAAGCCGTACAAGGCTGTGAAGTTGTATAAAGAGATGAAGATGAAGGGGATAAAGTTGGACGT CGTTGCGTATAATACCACGATTCTAGCGGTTGGAATGTCGCAAGGTATGGATTCTGCGACGAGAGTGTACCGCGAGATGAAGGAGATGGGCTGCGAACCG AATGTTGTGACTTGTAACACCATGGTGAAACTTTTGTGTGATAATTCGAGGAAGGAGGAAGCGTATGAGTGGCTTGATAAGATGGGGAAGGAAGGTATCC GTCCGGATGTGATGACTTATCATTGTTTTTACCGTTCTCTTGATGATCCGAAGAAGATTCTTCAGCTGTTCGATGAGATGCTTCGGAATGGAGTTGAGCC GACGATGAACACTTTTGTGATGCTCCTCAAGAAGTTTGGGAAATGGGGATTCCTTAGGCCCGCCTCTATTGTTTGGTCGAAGATGCTAGAACTTGGATAT AGTCCTGATGAGTCTGCTTACAATGCTTGGATTGATGCTTTAATTGATAAAGGGTTGTTGGATGAAGCTTGGAAGTACGATCAAGAGATGCGGGAAAAGG GGCTCTCTGCTAAGCGAAGGAAAGTGTTTGAAAGTAGGTCTTTAGAAGGATAA
AA sequence Show only first row Show all	>Lus10037555 pacid=23167097 polypeptide=Lus10037555 locus=Lus10037555.g ID=Lus10037555.BGIv1.0 annot-version=v1.0 MASSTLLRRLNRLPLLRKSAAHSLSTAPTPHSSTFRASEQQPRPPSHMDVLEKLKLQSNDWKTALDYFTFVENDHRFAHTTETFNCMIGILGKFFEFDLS WRLIERMPKPNHATFRVMFKRYVSAKLVQEALLAYQRSAEFGLRDETCYSYLVDALCEYKHVSDAEEFLFRKKPKPSGDDDDDDDDDEIAVVMANSTKVH NMILRGWFKMNRFGKCREFWEEMDRKGVNKDLHSYSIYMDIMCKSGKPYKAVKLYKEMKMKGIKLDVVAYNTTILAVGMSQGMDSATRVYREMKEMGCEP NVVTCNTMVKLLCDNSRKEEAYEWLDKMGKEGIRPDVMTYHCFYRSLDDPKKILQLFDEMLRNGVEPTMNTFVMLLKKFGKWGFLRPASIVWSKMLELGY SPDESAYNAWIDALIDKGLLDEAWKYDQEMREKGLSAKRRKVFESRSLEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10037555 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10038464 [exp]	5.2	0.7734
					Lus10027385 [exp]	44.3	0.7072
AT3G02065			P-loop containing nucleoside t...		Lus10006736 [exp]	69.9	0.6812
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	128.0	0.6308
AT4G19110			Protein kinase superfamily pro...		Lus10005183 [exp]	153.2	0.6738
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010074 [exp]	154.3	0.6638
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	206.8	0.6280
AT2G17030			F-box family protein with a do...		Lus10022650 [exp]	216.9	0.6559
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Lus10039451 [exp]	277.5	0.6247

Compare expression of checked genes

Lus10037555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.