Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79830 796 / 0 GC5 golgin candidate 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011437 [exp] 1547 / 0 AT1G79830 949 / 0.0 golgin candidate 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G052100 [exp] 944 / 0 AT1G79830 944 / 0.0 golgin candidate 5 (.1.2.3.4) Potri.001G185050 [exp] 816 / 0 AT1G79830 986 / 0.0 golgin candidate 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12325 [flax] [poplar] TMF_TATA_bd TATA element modulatory factor 1 TATA binding PF12329 [flax] [poplar] TMF_DNA_bd TATA element modulatory factor 1 DNA binding
Representative CDS sequence Show only first row Show all	>Lus10037556 pacid=23167212 polypeptide=Lus10037556 locus=Lus10037556.g ID=Lus10037556.BGIv1.0 annot-version=v1.0 ATGGCGTGGTTTAGCGGGAAAGTTTCGTTGGGGAACTTGGATCTGGCTGGGGCAGTGAATAAGCTCAGCGAGAGCGTCAAGAATATTGAGAAGAATTTCG ATAATGCTCTTGGTTTCGAAGAGAAGCCTTCTTCCTCCGATTCGTCTCCCAACGCTGAAGGACTATGGCCAATGATGTCATGGAACAAGGGTGAGGATGT TGATGAAGGGTCTACGGGGGACACAAAATCACCTCAGAAATCATCTATTGGTGAGGATTCCAAAGAGGAGGATAGTTCAAATGAACCTTCAGAGAAAACA GTTTCTCCTCAGAAATCATCGGCTGTCAAGGAAAGTCGTGAAAGTGAGGATGATGATGCCGAGTCAACAAAGAAAAATGGTTCTCCACATATACTGTCTG TTGATTCTTCCGAAAAAGCTCAATCTCCACAGAGAGTGTCCTCTTCTGACGATCAAGAGATTCAGAAATCGGTGTCTGCCGACAGATCTCCTCAGGAAAA TGAGGAACATGAGACCCGCAGATCTGATGAGCATCTGGAGACTGCTGAAAGAGAAGAGGGCAAGACTTCAGAACCTGGAATAGACGACTTGCACAATCAA TCACAAACAATCCCTGCTGAAGAAGTTGACTCCGGGATAAAAGCGTTGGATTCTGTTGTCGATCGACAAGATAGTGAAGTCTTGGGATCGCAGGCTACTG AAATTTTGGATTCAATGAATTCTAATATTGAAGCTGTTGAACCAGGCCCAGCGGGGTATGTATCCATAGCTCAAGGGGAGCTAAGGGAATCAATTGAAAT GCATCCAAGTGGAAATGAGGAAAAGAAAGAAGAGAGTTCAGAGGTAAGTCTAGCTGAAGCTGAAAGGTCAAGTCAACCAGAGGCATTCAGTAATGGCCCA ACCGGTGTAAGAGTTGAGCAATCTGATTTACAGCTTGTTGTTGACAAAGAAGGTGAAGTTGATCATGAAGCTTCCGTGTCCTCTGGACTTTCATCAGAAA GGGCATCTGATGCATCAATTTCCAATGTAAATAGTATTGATATTATGGCAGTTGGCATGGAAAAGCAAGTTCATGATGGAAGGGTTGATGTTGGAGGGGT AAACTTGGATGTTGGATTACACTCATCTACTTCCATGCATTATGAACTTGAACTTGAAAAGTTGAAGAAGGAGATGCACATGATGGAAGCTGCGTTGCAA GGTGCTGCAAGGCAAGCTCAGGCAAAAGCAGATGACATAGCAAAACTGATGACTGAAAATGAGCACCTGAAAAGTTTGATTGAGGATTTGAAGAGAAAGT CGAATGATGCCGAGATTGAATCTTTGAGAGAGGAATACCATCAAAGAGTCGCAACTCTAGAAAGAAAGGTCTATGCCCTAACAAAGGAGAGAGACACACT GCGTAGAGAGCAAAATAAGAAAAGTGACGCTGCTGCTCTGCTAAAGGAAAAAGACGAAATTATTACCCAGGTTATGGCTGAAGGGGAAGAACTTTCGAAA AAGCAGGCTGCCCAGGAATCTACTATCAGGAAATTAAGAGCTCAGATCAGAGAACTTGAGGAAGAGAAGAAAGGTTTGACTACCAAACTTCAGGTTGAAG AGAACAAAGCAGAAAGTATCAAGAAGGATAAGACAGCCACTGAGACATTGCTGCAAGAAACAATTGAAAAGCACCAAGCAGAACTTGCGGCACATGAAGA ATACTATACAAATGCTTTGACTGCGGCAAGAGAAGCCGAGGCATTGGCTGAGGCACGTGTCAACAGTGAAGCTAGAGTTGAATTAGAGAATCTTCTAAGA GAGGCAGGAGAACGTGAGACTATGCTGGTTCAGGAACTGGAAGAATTAAGGCAAACATTGAGTAGAAAGGATCAGCAGGCTGTTTACATGGAAGACATGC ACCGGAGAGAGATTGAAGATCTTCAAAAACGTTATCAAGCAAGTGAGAGGCGGTGTGAGGAATTAGTTTCTCAAGTTCCCGATTCCACAAGGCCTCTTCT TCGACAGATTGAAGCGATGCAGGAAACAATGTCCCGAAGGGCTGAAGCCTGGAATGCTGTGGAGAGGTCACTAAGTTCTCGTCTTCAGGAAGCAGAGTCC AAAGCTGCAGCTGCTGAGGAAAAGAAACGATCTATGAATGACCGTTTGTCTCAAACCTTATCTAGAATTAATGTTCTTGAAGCTCAGATTTCATGTCTTA GAGCAGAACAGACACAGTTAAATAAGTCAATTGAAAAGGAGAGGCAGAGGGCAGCTGAAAATAGACAAGAGTATCTTGCCGCCAAGGAGGAAGCTGACAC TCATGAAGGACGTGCAAACCAATTAGAAGAAGAAATTAAAGAACTTAGACGAAAGCATAAACAAGAATTACAAGAAGCACTTGTGCAGAAAGAGAGATTA CAACAGGAGGTTGAGAGGGAGAAAGCAGCTCGGTTGGATTTAGAACAAACAAAGCGTCTCCAATCTGCTGGTTCACTTGACCATACACTTATTGCTAGGA CCCAATCAGCCGTTGAAAATGGCCACACGATCCGGAAACTCTCAAATGCTGGTAGTGTGGAGGAGAGCTATTTTCTTCAAGCTACTCTGGATGCATCGAA CAGTTACAGTGATAGGAGAAGTTCTGGAGAAGCAACTGTGAGCCCCTATTACGTGAAGAGCATGACACCTAGTGCTTTTGAGTCTGCCCTCCGCCAGAAA GAAGGCGAACTTGCTTCATACATGTCTCGTTTGGCATCACTGGAATCAATTCGTGACTCTCTTGCGGAGGAGTTGGTTAAAATGACGGAGCAGTGCGAAA AATTGAGAGCCGACTCTGCTCTGTTACCTGGGATACGGGCAGAGCTCGATGCACTAAGGCGGAGACACTCTGCTGCCTTGGAATTAATGGGGGAACGTGA TGAGGAGCTGGAGGAACTGCGTGCTGATATTGTAGACTTGAAAGAAATGTACAGAGAGCAAGTAAACTTACTTGTGAATAAGATCCAGCAAACGAATTCC TCGGTTTCGTGA
AA sequence Show only first row Show all	>Lus10037556 pacid=23167212 polypeptide=Lus10037556 locus=Lus10037556.g ID=Lus10037556.BGIv1.0 annot-version=v1.0 MAWFSGKVSLGNLDLAGAVNKLSESVKNIEKNFDNALGFEEKPSSSDSSPNAEGLWPMMSWNKGEDVDEGSTGDTKSPQKSSIGEDSKEEDSSNEPSEKT VSPQKSSAVKESRESEDDDAESTKKNGSPHILSVDSSEKAQSPQRVSSSDDQEIQKSVSADRSPQENEEHETRRSDEHLETAEREEGKTSEPGIDDLHNQ SQTIPAEEVDSGIKALDSVVDRQDSEVLGSQATEILDSMNSNIEAVEPGPAGYVSIAQGELRESIEMHPSGNEEKKEESSEVSLAEAERSSQPEAFSNGP TGVRVEQSDLQLVVDKEGEVDHEASVSSGLSSERASDASISNVNSIDIMAVGMEKQVHDGRVDVGGVNLDVGLHSSTSMHYELELEKLKKEMHMMEAALQ GAARQAQAKADDIAKLMTENEHLKSLIEDLKRKSNDAEIESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIITQVMAEGEELSK KQAAQESTIRKLRAQIRELEEEKKGLTTKLQVEENKAESIKKDKTATETLLQETIEKHQAELAAHEEYYTNALTAAREAEALAEARVNSEARVELENLLR EAGERETMLVQELEELRQTLSRKDQQAVYMEDMHRREIEDLQKRYQASERRCEELVSQVPDSTRPLLRQIEAMQETMSRRAEAWNAVERSLSSRLQEAES KAAAAEEKKRSMNDRLSQTLSRINVLEAQISCLRAEQTQLNKSIEKERQRAAENRQEYLAAKEEADTHEGRANQLEEEIKELRRKHKQELQEALVQKERL QQEVEREKAARLDLEQTKRLQSAGSLDHTLIARTQSAVENGHTIRKLSNAGSVEESYFLQATLDASNSYSDRRSSGEATVSPYYVKSMTPSAFESALRQK EGELASYMSRLASLESIRDSLAEELVKMTEQCEKLRADSALLPGIRAELDALRRRHSAALELMGERDEELEELRADIVDLKEMYREQVNLLVNKIQQTNS SVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10037556 [exp]	0	1
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	1.0	0.9400
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10033345 [exp]	2.2	0.8611
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	2.4	0.8673
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034471 [exp]	3.9	0.8321
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	9.3	0.8142
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	10.4	0.8654
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	10.5	0.8691
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	10.9	0.8292
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	11.7	0.8609
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10000390 [exp]	14.1	0.7806

Compare expression of checked genes

Lus10037556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.