Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48120 676 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011436 [exp] 1801 / 0 AT5G48120 900 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G048800 [exp] 939 / 0 AT5G48120 991 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037557 pacid=23167287 polypeptide=Lus10037557 locus=Lus10037557.g ID=Lus10037557.BGIv1.0 annot-version=v1.0 ATGGCTGAACCCAGCCAGCTGAACCGGCACATTGAATCCTATGTCGACGTCTCACGCTCCTCCGCCCAGCAGGGAGCAAGTTTGGATTCAATTGTTGCGC TCTTGAATAACGATGTAATTACTATATCATCACTGGCAGATTGGAGAGCTTTACGTGGCGCTCTTGTTGGCTGCTTGGCACTGATGAGAAGAAAGAGTTG GGGTGTAGTCAATGCAGATGATGCAGTGGTGGTTGCAAAGTTTTATGTAGAATTTTTGCAGGTGCAATCTTTGGCACAGCATGACAGGAAGCTTTCCTTT GAGCTATTGGAGTGTCTTCTGGAGCGCCATCCTCATGTTGTTACTTCAGTGCAGGACTTCCATTTTATTGATAGAATCTGTGAAGATATTGAAGGAGAAA AGGATCCCGAGTGCCTAATGCTAATATTCCATATTGTGGAACTTCTGGTGAAAGCACATCCAAATACTTCTGGTCTGGTTTCTAATGACATCGGTGAACT CTTCAATATTTTGAGCTGCTACTTTCCCATACATTTTACACATCCAAAAACAGAAGAGGGCGGTGTGGGAAAGGATGATCTCTCAACAGCACTCATGATG GCATTTTCTGCAACACCTCTTTTTGAACCCTTTGTTGTTCCATTGCTGCTCGAGAAACTTTCTTCATCCCTACTGTCAGCAAAGGTTGATTCTTTGAAGT TTCTAAATCACTGCGCACCAAAATATGGCAGAGATAGAATGGGAAAACATGCTACAGCTATTTGGTCTTCCTTAAAGGACACTATATATACAACAAAACC AGAGCCTCCTGTATCTTTCACTTCAGATTCACTGGATAGTCCAGCTGCTAAGGAGAACGAGATATTCACTGAAGCTTTTGGATTGTTGGAAAAGATCATC TCCTTAGACAAAAACAATGAGCCCTTTCTCAGTATAGTTATTGGCGACAATGGCATTAACTCGGTTTTCAATACCATATCTAGTTATAGCAGCTACGAAG AGAGTTCCATTGAAGACAGGCAGAAACTGCTTATCATTGGTCGTATCTTGTACGTCTCTGCAAAATCCTCTGTTTCATCCTGCAAAGGAATCGTTGAATG TTTCTTACCTCGCCTGATGGAGGATTTGGAGCTTTCACTGGATAGAGCTTCTCGTTATTGCAATACAAATGGCATTGTTCTCTCTAGAAAGACAAGCTTT GGGTCTCTTTATCTGTTAACTGAACTTCTCAAGGGATGCAGAGATTTGGGGATCAGTAAAGAGGATCTTGCATTGGAAATTGATATCCAAAATGACACTT GGTGCTGCTTGCTTCAATGTTTATGTGGGCCCTTGAGCAAAACCTTCAGTTCTATCTCTGCAAAGTACAAAAATGAACCTGCCAATGAAGTTTATCTACA TCTTGCTGTAAGAGGCCTGCAGGTACTTGCTTTATTGCCAGGCGGCTCTTTGATAGTCCCAAATTCGACTTTTGAAGATATTTTGGAGAAACTCGTCTCG ATTGTTGCAGAGGATTCCAGCAACATAATACTGTGGAGGCTAGCATTGAATGCACTGGTCCATATTGCTACATTCATTCAGAAGTTTGATGAGCCAGATA AAGAAATGAGATACATGAATGTCGTTGTTGAGAAACTTGTTCCCATGGCAGACGGTAATCTAAGTTTGGCTAAAACTACATGCCAACTTTTGGAATGTTA TTCCACTGAGATGATCCCATGGTATATGCAGACAAATGAAGGATCAGAGGAAGTGCTGTTAAAATTTGTTCTCAACATTTGGGAGACAATAGAAGACGGT TTGCCTCTCATTGTCACTGTAAATAATAAAGAGCTTCTTGACGCACTGATTAAAGTGATGAAGCATTCTGTCGCATGTTGTTCAGTGGATAGCCAGAACG TAATTATAGATAAAGCTTATAGAGCAGTGTCGACAATTACTTCTTTCCCACTAAAAGAGTTATCTCCTATCTTTCCAGCACCTTCGGAAGAGTTAAAACA GATTCAAGAAGTAGACAAGTTATCCAACAGGGATGAATTGGTTCTCGCATTATATGCATCGGTGATTATAGGACTTCATCCGCAGGCTCAAGTTCCAAAT CTGAGAACAACTGCACATTTATTTAGGGTTGCCCTCTTCAAAGAAAATGTTAATGCAGCTCAAGCATATGGCTCTCTGGTTAATAAACTGACTCCAAAGT CCAATACACCAGATGAGTTGGGGCTGCTTACCGTTGACCAGGCAATGGATATGGTTTTGAGCAAAGATTTCCTAGCCTCTTTCGACTTCTATTCAGGAAG TGATAGAATCTACAATGGAACTGGTACCCGTCCTGATTATTTAAGCCTTGGTCTTGCCAACAATGGATTATGGCAGATATATGCCATTGCTGAACTGGCA TGGATTGGAAAAGGGTTGCTTCTGCGTGGTCATGAACGAGTTAAAGACGTAGTTATGGTGCTCCTGAAGTGCCTACTGGATTATGGAAACACAAGTTCAT TGCTACTGGAACAAGATTCGTCGGATATCATAGAAAAAGTATGTCCATCTGTGGCAGAAGCTGCTGCTGATGCATTTCAAGTTCTCATTAGTGATTCAGA TCATTGTTTAAACCGCAAGTTTCACGCGATACTACGACCTCTTTATAAGCAAAGGTTCTTCTCTACCATGAGGCCTATACTGGTATCTCTAATTGTTAAA TCCAAGTCATCATTGTCCAGACGGCTGCTATACCGTGCTTTTGTGCATGTTATATCAGAAACTCCTCTTGTGGCTATCTTAAACGATGCAGTAAAGTTAG TTTCATTGTTGGTGGATGGCATAAGCTATCTAAGTAAGGATGCTTCAGATAAAGATGTTTTGTACAGTCTCCTGCTCGCATTATCAGGGATATTGACAGA TAATAGTGGGCAAGAAGCCGTTGCAGAAAATACACACATCGTCGTTAATTGCCTAGTTGACCTCATCGCTTATCCTCACAGAATGCTTGTTCGGGAGACT GCAATTCAGTGTCTCACCGCGATGTCTCAGCTGCCTTACCCAAAGATTTACCCCAGAAGAGTTCAGGTGTTACAAGCTGCGTCACGAGCTCTAGACGATC CAAAGAGAGCCGTTCGTCAAGAAGCTGTCAAGTGCCAGCAAGCATGGTTAGTTCTTTACGCGTTCCTGTTTGCGATTCTTCTCGTCGTGAATTCGTGA
AA sequence Show only first row Show all	>Lus10037557 pacid=23167287 polypeptide=Lus10037557 locus=Lus10037557.g ID=Lus10037557.BGIv1.0 annot-version=v1.0 MAEPSQLNRHIESYVDVSRSSAQQGASLDSIVALLNNDVITISSLADWRALRGALVGCLALMRRKSWGVVNADDAVVVAKFYVEFLQVQSLAQHDRKLSF ELLECLLERHPHVVTSVQDFHFIDRICEDIEGEKDPECLMLIFHIVELLVKAHPNTSGLVSNDIGELFNILSCYFPIHFTHPKTEEGGVGKDDLSTALMM AFSATPLFEPFVVPLLLEKLSSSLLSAKVDSLKFLNHCAPKYGRDRMGKHATAIWSSLKDTIYTTKPEPPVSFTSDSLDSPAAKENEIFTEAFGLLEKII SLDKNNEPFLSIVIGDNGINSVFNTISSYSSYEESSIEDRQKLLIIGRILYVSAKSSVSSCKGIVECFLPRLMEDLELSLDRASRYCNTNGIVLSRKTSF GSLYLLTELLKGCRDLGISKEDLALEIDIQNDTWCCLLQCLCGPLSKTFSSISAKYKNEPANEVYLHLAVRGLQVLALLPGGSLIVPNSTFEDILEKLVS IVAEDSSNIILWRLALNALVHIATFIQKFDEPDKEMRYMNVVVEKLVPMADGNLSLAKTTCQLLECYSTEMIPWYMQTNEGSEEVLLKFVLNIWETIEDG LPLIVTVNNKELLDALIKVMKHSVACCSVDSQNVIIDKAYRAVSTITSFPLKELSPIFPAPSEELKQIQEVDKLSNRDELVLALYASVIIGLHPQAQVPN LRTTAHLFRVALFKENVNAAQAYGSLVNKLTPKSNTPDELGLLTVDQAMDMVLSKDFLASFDFYSGSDRIYNGTGTRPDYLSLGLANNGLWQIYAIAELA WIGKGLLLRGHERVKDVVMVLLKCLLDYGNTSSLLLEQDSSDIIEKVCPSVAEAAADAFQVLISDSDHCLNRKFHAILRPLYKQRFFSTMRPILVSLIVK SKSSLSRRLLYRAFVHVISETPLVAILNDAVKLVSLLVDGISYLSKDASDKDVLYSLLLALSGILTDNSGQEAVAENTHIVVNCLVDLIAYPHRMLVRET AIQCLTAMSQLPYPKIYPRRVQVLQAASRALDDPKRAVRQEAVKCQQAWLVLYAFLFAILLVVNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	0	1
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	5.8	0.8228
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	13.1	0.8102
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	14.5	0.7780
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	15.0	0.7775
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025533 [exp]	18.2	0.6930
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	21.0	0.7634
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	21.4	0.8141
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	25.2	0.7786
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	27.3	0.7592
AT4G04180			P-loop containing nucleoside t...		Lus10040913 [exp]	31.4	0.7413

Compare expression of checked genes

Lus10037557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.