Plant FIBer expression Database

Lus10037558 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79730 478 / 1e-161 ELF7 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G048900
[exp]
575 / 0 AT1G79730 546 / 0.0 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
Potri.001G190000
[exp]
575 / 0 AT1G79730 563 / 0.0 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03985 Paf1 Paf1
Representative CDS sequence
>Lus10037558 pacid=23167139 polypeptide=Lus10037558 locus=Lus10037558.g ID=Lus10037558.BGIv1.0 annot-version=v1.0
ATGGCCTCTTACAGGCCATTCCCACCACAATCTGCGTTTCCTCAGCCACCACCTCTACCACCGCAGAATCAAGCACAGCCGCCACCTCCGCCACCGCCGA
ATCAAGCACAGCCGCCGCACAGGGTAAACCAGTATAATCAAAGCTATGGCAGTCATATGGCTCAACCACCTCCTTCTACATTCCCACAGAACTACTCACA
ACAGCAGAACTTCCCGCCACATTACCCGCATCAGCAGTACCCTTACCCGCCACAGCCTCCAATGGCGGCAGCGCAGCCACCACTGCCCCCTGATTCTTCA
TATCCTCCTCCACCGCCGCCACCTGTACCAGGCCAACCACAACAGCAGCCATCATCTATGTATTACCAATCTTCCCAGTATAACCAACAGTCAATGCAGC
CCCTAGCTCCACCGCCTCCACCGCCTTCTCCGCCTCCCAGTTCGTCAATGCCGCCCCCGCCACCGCCCAGCTCACCACCTCCTCCTCCGCCACCTGCCAA
GGAAAGCGGAAAGGAAAGAGAGAAGGGGGGTTCTAGGGACCGGAGAGAGCATAGGAACTCTGACCATGGCAAATCAAATCAACACAAGTTGCCAATTCCT
CCACCGAGCAAGAAGGTCAATGGACCTGGGGGAAGGGCGGAGACGGAGGACGAGAGAAGGTTGAGAAAGAAGAGAGAATTTGAAAAGCATAGGCACGAGG
AGAAACAAAGGCAGCAGTTGAAAGAATCACAAAAGAATCAAGTGTCCTCTTCTCAGAAGGGACATGGTTCTATTGCCGGGCAACGGGTTGGGGATAGGAG
AGCCACCCCGTTGTTGGCTGCAGAGAGAAATGAGAACAGGTTGAAAAAGCCAACAACTTTCTTGTGCAAGCTGAAATTCCGTAACGAACTTCCAGATCCT
AGTGCACAGCCAAAGATTATGACTCTAAAGAAAGATGATGATCGATTTACAAAGTACAGAATCAGATCATTGGAGAAGATGAATAAACCAAAACTATATG
TTGAGCCAGATCTTGGGATTCCTCTTGACCTCCTTGATCTCAGTGTTTATAATCCACCAAGTGTTAGAGCACCTCTGGACTTTGAAGACGAGGAGTTGTT
ACGTGATGATGAAGCACTTACCCCTGTGAAAAAAGATGGGATACGGAGAAAAGAAAGGCCCACCGATGAAGGTGTTGCATGGCTAGTCAAAACTCAGTAT
GTTTCCGGTTATAGCATGGAAACAAACAAGCAGTCTATGGCTGATAAGCAAGCAAAGAACCGAGAAATGAAAGGAGCCAACTTGTTGGACAACCTTAATG
ATAGGGAGAGACAAATCAAGGAAATTGAAGCCTCATTTGAAGCTTGCAAGTTACCACCTGTCCATGCAACAAATAAAAACTTGCGTCCTGTGGAGGTTTT
ACCATTGATCCCCGATTTTGATAGGTATGAAGGTAAATTTACCCTCGTGACGTTCGATGGTGCTCCAACACAAGATTTTGAGCAATATGGCAAGTTGGAT
CCGTCTATCCGAGAGGAATGTGAATCACGGGCTGTTATGAAAGCTTGCGTGATTTCAGGCTCCGATCCAACGAAGCCAGAGAAGTTTCTGGGCTACATGG
TTCCGAATCCTAATGAGTTGTCGAAAGATATGTTCGATGAGCATGAGGATATCTCGTATTCCTGGATCCGAGAGTACAATTGGGATATACACGGTGACGA
TGGTGAACCAACGACATTCGTTGTTTCATTTGACGATTCCGAAGCTCGATATGTGCCACTTCCGTCGAAGATTACCTTGAAAAGGAAGAGAGCCATAGAG
GGAAAATCCAAAGAAGAGGTCGAACATTTTCCGGCCCCTGCAAGGGTCACGGCAAGGTGGAGGCCTGATGCGGCATCAATCGAGCATCGAGAAACCGGGG
TTGGTAGCTCGAAGTCGAGAGGTAACAATTCGAGATCGAGGATGGCAAGGTCGGATGACGAAGACGAAGAGCTCGAGAGAGTACATAAGATGTCCCGGCA
CCAAGACATGGACCAGTACAGTGCAGGCGAGGATGATTTATCCGAATAG
AA sequence
>Lus10037558 pacid=23167139 polypeptide=Lus10037558 locus=Lus10037558.g ID=Lus10037558.BGIv1.0 annot-version=v1.0
MASYRPFPPQSAFPQPPPLPPQNQAQPPPPPPPNQAQPPHRVNQYNQSYGSHMAQPPPSTFPQNYSQQQNFPPHYPHQQYPYPPQPPMAAAQPPLPPDSS
YPPPPPPPVPGQPQQQPSSMYYQSSQYNQQSMQPLAPPPPPPSPPPSSSMPPPPPPSSPPPPPPPAKESGKEREKGGSRDRREHRNSDHGKSNQHKLPIP
PPSKKVNGPGGRAETEDERRLRKKREFEKHRHEEKQRQQLKESQKNQVSSSQKGHGSIAGQRVGDRRATPLLAAERNENRLKKPTTFLCKLKFRNELPDP
SAQPKIMTLKKDDDRFTKYRIRSLEKMNKPKLYVEPDLGIPLDLLDLSVYNPPSVRAPLDFEDEELLRDDEALTPVKKDGIRRKERPTDEGVAWLVKTQY
VSGYSMETNKQSMADKQAKNREMKGANLLDNLNDRERQIKEIEASFEACKLPPVHATNKNLRPVEVLPLIPDFDRYEGKFTLVTFDGAPTQDFEQYGKLD
PSIREECESRAVMKACVISGSDPTKPEKFLGYMVPNPNELSKDMFDEHEDISYSWIREYNWDIHGDDGEPTTFVVSFDDSEARYVPLPSKITLKRKRAIE
GKSKEEVEHFPAPARVTARWRPDAASIEHRETGVGSSKSRGNNSRSRMARSDDEDEELERVHKMSRHQDMDQYSAGEDDLSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Lus10037558
[exp]
0 1
AT4G24560 UBP16 ubiquitin-specific protease 16... Lus10009273
[exp]
2.0 0.8992
AT5G05240 Uncharacterised conserved prot... Lus10029030
[exp]
3.2 0.9044
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Lus10028403
[exp]
6.7 0.9166
AT1G29370 Kinase-related protein of unkn... Lus10007338
[exp]
7.3 0.8481
AT1G29350 Kinase-related protein of unkn... Lus10025382
[exp]
10.2 0.8854
AT1G15750 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOP... Lus10001951
[exp]
10.3 0.8225
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Lus10031984
[exp]
12.4 0.8746
AT3G07400 lipase class 3 family protein ... Lus10020409
[exp]
14.0 0.8495
AT5G04560 DME1, DME DEMETER, HhH-GPD base excision... Lus10023864
[exp]
15.5 0.9026
AT1G43850 SEU SEUSS transcriptional co-regul... Lus10042785
[exp]
16.5 0.8360

Lus10037558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.