Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 312 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 260 / 3e-85 ATSEH soluble epoxide hydrolase (.1) AT3G05600 257 / 4e-84 alpha/beta-Hydrolases superfamily protein (.1) AT2G26750 256 / 7e-84 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 245 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 230 / 6e-74 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 200 / 6e-62 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037577 [exp] 526 / 0 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 518 / 0 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 303 / 4e-102 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 301 / 1e-101 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 297 / 8e-100 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 288 / 3e-96 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 264 / 7e-87 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10008684 [exp] 261 / 2e-86 AT4G02340 369 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 256 / 1e-83 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 322 / 6e-110 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 315 / 6e-107 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 301 / 4e-101 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 284 / 2e-94 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 283 / 2e-94 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 268 / 1e-88 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 267 / 3e-88 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 230 / 1e-73 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 171 / 1e-50 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 167 / 2e-49 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037559 pacid=23167117 polypeptide=Lus10037559 locus=Lus10037559.g ID=Lus10037559.BGIv1.0 annot-version=v1.0 ATGGAGATCACCGACGAAGCGATCCACCACTCCACAATCCGTACCAACGGAATCAACATGCACATCGCCACCACCGGACCTCCCACCGCCGAATCCACGA TCCTCTTCCTGCACGGCTTCCCAGAGCTCTGGTGCAACTGGCGTCGCCAGCTCCTGGCCATCCCTTCCCTCGGTGACTACACCTGCGTAGCTCCCGACCT CCGCGGGTACGGCGACACCGACGCCCCGACGTCTCCGGCCAAGTACACCGCCTTCCACATCGTCGGCGACCTCGTGGGGCTCCTCGATTTCCTTGGGGTC GACAAGGCGTTCGTGGTGGGACATGACTGGGGAGCCGCTATGAGTTGGTACTTTGCCAGGTTCCGACCCGATCGGGTCAGGGCGGTGGTGAGTGTCGGCG TGCCGCCGCTCCGGCAGTCCCCTGCTTCCGATATGCTTGATGAGGTCAGGGGTGCTTGCGGGGATGATTTCTACTACTGTAGGTTTCAGGAAATGGGAGA GGCAGAGGAAGAATTTGCAAAAGTAGACACAAAGAAACTGATAACCAAGCTGTATACACTGTTCAGCAAACCAGATCCACCAATGGTGTCCAAGGAAACA GGATTCAGTGGGTTACCAGATCCACCAACCTCATTCCTCCCATGGCTGCCAGAACAAGACGTGGATTACTACGCATCCAAGTTCAGCAAGACCGGGTTCA CCGGAGGACTCAACTACTACCGAGCCTTCTCCCTCACCGGGGAGCTTCTGGGTCCATGGTCTGGAGGAGGTTGCAAGTGCAAAGTCCCAGCTAAGTTGAT CATTGGGGATCAAGATGTTTGCTACCACATGCCTGGGATGAAGGACTACATACACGGTGAAGAGTTCAAGAAGGAAGTTCCGATGCTCGAGGAAGTCGTG GTCATGGAAGGAGTGCCGCATTTCGCAAACTTGGTCAAGCCCGAAGAGGTCACCCGGCACATTGTCGAGTTCATCAAACGCTTCTGA
AA sequence Show only first row Show all	>Lus10037559 pacid=23167117 polypeptide=Lus10037559 locus=Lus10037559.g ID=Lus10037559.BGIv1.0 annot-version=v1.0 MEITDEAIHHSTIRTNGINMHIATTGPPTAESTILFLHGFPELWCNWRRQLLAIPSLGDYTCVAPDLRGYGDTDAPTSPAKYTAFHIVGDLVGLLDFLGV DKAFVVGHDWGAAMSWYFARFRPDRVRAVVSVGVPPLRQSPASDMLDEVRGACGDDFYYCRFQEMGEAEEEFAKVDTKKLITKLYTLFSKPDPPMVSKET GFSGLPDPPTSFLPWLPEQDVDYYASKFSKTGFTGGLNYYRAFSLTGELLGPWSGGGCKCKVPAKLIIGDQDVCYHMPGMKDYIHGEEFKKEVPMLEEVV VMEGVPHFANLVKPEEVTRHIVEFIKRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	0	1
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	2.0	0.8786
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031818 [exp]	2.8	0.8580
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	5.2	0.8343
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	6.0	0.7830
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	6.3	0.8334
AT4G17750	HSF	ATHSFA1A, ATHSF...	ARABIDOPSIS THALIANA CLASS A H...		Lus10023636 [exp]	6.7	0.7301
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	7.9	0.8108
					Lus10027443 [exp]	9.5	0.7893
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	10.7	0.7767
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10041319 [exp]	12.6	0.8274

Compare expression of checked genes

Lus10037559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.