Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79750 924 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G25880 888 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT5G11670 867 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G19900 830 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT2G13560 388 / 9e-127 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 369 / 1e-119 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014149 [exp] 1246 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10025823 [exp] 1051 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10011125 [exp] 910 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10043025 [exp] 844 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 840 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10005484 [exp] 830 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005483 [exp] 751 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10034963 [exp] 647 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10006036 [exp] 610 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G049300 [exp] 958 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 952 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G086700 [exp] 895 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G046600 [exp] 877 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 872 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.002G135300 [exp] 382 / 1e-124 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 374 / 1e-121 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 371 / 1e-120 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 365 / 4e-118 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10037561 pacid=23167013 polypeptide=Lus10037561 locus=Lus10037561.g ID=Lus10037561.BGIv1.0 annot-version=v1.0 ATGATCTCTCTCAGCCGAACCACTGTTCTGAACAAAGCGAGCTTATCAGGGTTTTCCAGCCCATTTCCGGATAGGCGAAGAGGAGGAAGTTCCGCTAAGT TCCCATGTTCCTTGAAAGTGAAAGCTGCGGCTGCTGACGGAAACGGCACCGTTTTGGAGATCGATGCGGTTAAACAGACCAAGACGACGAAAGCGGAAGC AGCTAGCTCTGTGATCGACGGCTCTCGGCCCAATGTTGCTGGCGGAATCCGCGATGTGTACGGTGAGGATACGGCCACCGAGGACCAGGCTGTTACTCCT TGGGCTCTTTCAGTAGCTAGTGGCTACTCGTTGTTGCGAGATCCTCGTCACAACAAAGGTCTTGCCTTTACGGATAAAGAGAGAGATGCTCATTACCTCC TTGGTCTTCTCCCTCCATCAGTTCCTTCTCAGGATCTTCAGGTGAAGAAACTAATGCACATTATTCGCCAGTATCAAGTGCCACTGCAGAAGTACATGTA TATGATGGATCTCCAGGAGAGAAATGAGCGCCTGTTCTACAAACTTCTTATCGAGCATGTTGAGGAGATGCTTCCCATTGTCTACACTCCAACTGTCGGA GAAGCTTGTCAGAAATACGGTAGCATCTTTAGCCGTCCTCAGGGTCTTTACATCAGCTTGAAGGAGAAGGGAAGGATCCTCGAGGTTTTGAGGAACTGGC CTGAAAAAAATATCCAAGTTATTGTTGTTACTGATGGCCAAAGGATATTGGGGCTTGGAGATCTTGGATGCCAGTGCTTGCCTATCACTATCGATGTCGG TACAAACAATGAGGCGTTGCTAAATGATGAGTTCTACATTGGTCTTAGGCAAAGACGGGCAACTGGACAGGAATATGCTGAATTACTTGATGAATTCATG ACGGCAGTGAAGCAGACTTATGGCGAGAGAGTCCTCGTTCAGTTTGAAGACTTTGCAAATCACAATGCATTTGATCTGCTTGCAAGATATGGAACTACAC ATCTTGTATTCAACGATGACATTCAGGGCACAGCTTCGGTGGTCCTTTCTGGACTTATGGCGGCTCTGAAAGTGTTAGGTGGAACGTTAGCCGATCACAG ATTCCTATTTTTGGGCGCGGGAGAGGCTGGCACTGGCATTGCAAATTTGATCGCCCTCGAGATATCCAAGCAGACAAAAATGCCACTGGAAGAGGCTCGG AAGAATATCTGGCTGGTGGACTCAAAGGGTCTGATTGTTGAATCCCGCAAGGAGTCACTGCAACACTTCAAGAAACCATGGGCTCATGAGCACGAACCTA TCGAAACGCTTCTAGAAGCTGTGAATGATATAAAGCCGACAGTGTTGATTGGTACGTCAGGAGCAGGACAAACGTTCACGCAAGATGTGGTCGAAGCCAT GGCCAACTTCAACGAGGCAAGTCCTCCGATTTTTCCGTGGCTTATCTTCTTCCTTCTGCAAAAACCTCTAATTCTTGCACTCTCCAATCCGACATCTCAG TCTGAGTGCACTGCTGAACAAGCATATACATGGACTAAGGGTCGTGCTATTTACGCTAGTGGAAGTCCATTCCCACCAGTTGAATTCGAGGGTCAAACAT ATGTGCCTGGCCAGGCAAACAATGCATACATTTTCCCCGGTCTAGGTCTCGGCTTAATCATGTCCGGAACCATCCGTGTCCACGACGATATGCTTCTTGC AGCCTCCGAAGCATTGGCTGCTCAGGTTACTCAAGAGAACTTGGACAATGGACTTGTATACCCGCCTTTCACAAACATCAGGAAGATTTCAGCTCAAATT GCTGCGAGTGTTGCTGCCAAGGCTTACGAACTCGGTTTGGCAACGCGTCTCCCGCGACCCAAGGATCTGGTGCAGTACGCCGAGAGCTGTATGTACAGCC CAGCTTACAGACATTACAGGTGA
AA sequence Show only first row Show all	>Lus10037561 pacid=23167013 polypeptide=Lus10037561 locus=Lus10037561.g ID=Lus10037561.BGIv1.0 annot-version=v1.0 MISLSRTTVLNKASLSGFSSPFPDRRRGGSSAKFPCSLKVKAAAADGNGTVLEIDAVKQTKTTKAEAASSVIDGSRPNVAGGIRDVYGEDTATEDQAVTP WALSVASGYSLLRDPRHNKGLAFTDKERDAHYLLGLLPPSVPSQDLQVKKLMHIIRQYQVPLQKYMYMMDLQERNERLFYKLLIEHVEEMLPIVYTPTVG EACQKYGSIFSRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGQRILGLGDLGCQCLPITIDVGTNNEALLNDEFYIGLRQRRATGQEYAELLDEFM TAVKQTYGERVLVQFEDFANHNAFDLLARYGTTHLVFNDDIQGTASVVLSGLMAALKVLGGTLADHRFLFLGAGEAGTGIANLIALEISKQTKMPLEEAR KNIWLVDSKGLIVESRKESLQHFKKPWAHEHEPIETLLEAVNDIKPTVLIGTSGAGQTFTQDVVEAMANFNEASPPIFPWLIFFLLQKPLILALSNPTSQ SECTAEQAYTWTKGRAIYASGSPFPPVEFEGQTYVPGQANNAYIFPGLGLGLIMSGTIRVHDDMLLAASEALAAQVTQENLDNGLVYPPFTNIRKISAQI AASVAAKAYELGLATRLPRPKDLVQYAESCMYSPAYRHYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	0	1
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	2.8	0.6831
AT4G12010			Disease resistance protein (TI...		Lus10007030 [exp]	4.1	0.6213
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	8.9	0.6677
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041668 [exp]	15.8	0.6433
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	21.4	0.6624
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	24.9	0.6521
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	33.1	0.6455
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	33.8	0.6495
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	34.4	0.6509
AT5G24810			ABC1 family protein (.1.2)		Lus10026970 [exp]	35.2	0.6319

Compare expression of checked genes

Lus10037561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.