Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59870 2132 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G16340 2093 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 2066 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G66950 1639 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT1G15520 1637 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 1631 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT2G29940 1563 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT2G26910 1561 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT3G53480 1505 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1) AT2G37280 1472 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014150 [exp] 2840 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10025824 [exp] 2596 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10008090 [exp] 1622 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1604 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1591 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1585 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 1553 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1549 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10008984 [exp] 1541 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189500 [exp] 2298 / 0 AT1G59870 2113 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Potri.003G049600 [exp] 2211 / 0 AT3G16340 2065 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Potri.001G048900 [exp] 1682 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G115000 [exp] 1680 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.018G032900 [exp] 1671 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1671 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1667 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1665 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1663 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1662 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10037562 pacid=23167318 polypeptide=Lus10037562 locus=Lus10037562.g ID=Lus10037562.BGIv1.0 annot-version=v1.0 ATGGAGGGATCCGAGCGGGTCAGGGCGTCGGGTCGGAGATCAGTGACCAGGAGCATAAGCCGGAGCCTGAGCAGGGCGAGCTGGAGCATGGAGGAGGTTT TCGCCGGCGGGAACTCTCGCCGGAGCAGTACTCACGGCGACGAAGATGAGGAGGCTCTGAAATGGGCGGCGATCGAGCGGCTACCGACTTACGACCGGCT GAGGACCACCATCATGAAATCTGTGATGGAGGATAACAACGCTGAGGGAATGTTCCGTGGGCATAAGCAAGTCGACGTGGCCAGGCTCGGCGACGGCGAC CGCCACCAGCTAACCGGTTTGGATAATCGAGTCCGCCACTTAGTAGCCGGAAAAGTCGTTTACAAAATCCTTAATCGACTCTATTATTTAGTAGCATTAA GGATTCCGGTCGAGTACCTCGCGGAAATTGTGACTATGGCTACATTGAGTTTGGTTATGGTCAACCGGGTTGGAATTCAACTGCCGAAGGTGGAAGTGAG GTTTGAGCACTTGACGATAGAGGCCGATTGCTACATCGGAGATCGAGCTTTGCCGACGTTACCGAATGTGGCTAGGAACATAGTAGAGTCGGGGCTTAAC AAGATTGGGATTCATTTGGCCAAGAGAACCAAGCTCACCATCCTCAAAGATGTCTCAGGAATCATCAAACCTTCCAGGATGGCCTTGTTGTTAGGTCCAC CTTCATCAGGGAAGACAAGTCTTCTTCTAGCAATGGCAGGCAAATTGGACCCGAATCTCAAGGTCAAAGGAAGCATAACCTACAACGGTCACACGATGAA AGAATTCGTTCCTAGGAAAACGTCCGCTTACATTAGCCAGAACGACGTCCACGTCGCTGAGATGACCGTGAAAGAGACGCTCGATTTCTCCGCTAGGTGC TTAGGTGTCGGCACGCGATATGATCTTCTAAGTGAATTGGGAAGAAGAGAAAAGGAAGCTGGAATCTTCCCTGAAGCAGAAGTTGACCTTTTCATGAAGG CAACGGCAATGAAAGGGGCTGAAAGCACTCTCAATACAGATTATACTCTAAAAATTCTTGGGCTTGATATATGCAAAGACACAATTGTAGGAGATGATAT GATTAGAGGAATCTCTGGTGGTCAGAAGAAAAGAGTTACTACAGGGGAGATGATCGTGGGGCCGACGAAAACTCTATTCATGGACGAGATATCAACGGGT CTGGACAGCTCCACAACGTACCAAATCGTGAAGTGCCTGCAGCAGATCGCGCACCTCACTGATGCCACCATCTTAATGTCCCTGCTCCAGCCTGCTCCCG AGACGTTCGATCTGTTCGATGACATCATCCTATTATCCGAGGGCCAAGTCGTGTACCAGGGCCCCCGCGAAAACATCCTCGAGTTCTTTGCTAGTTGTGG GTTCCGATGTCCCGAACGTAAGGGGACCGCTGATTTCTTGCAAGAGGTGACATCAAGGAAAGACCAAGAGCAATACTGGGCACACAGAGACAGGCCATAC CAATACGTGTCAGTCGCTGATTTGGTCGCGAAATTCAAGACATTCCACGTAGGAATGCGTCAGGACAATGACCTGTCGGTCCCATTCAACAAGTCACTAG GCCACAAGGCAGCATTAGTGTACAAGAAGTACACTGTCCCAAAACTGGACCTACTCAAGGCCAGTTGGGACAAAGAGTGGCTGCTCATGAAGAGGAACTC GGTGGTCTACGTGTCAAAGACCATCCAGATGATCGTGGTCGCGCTGATAGCATCCACCGTGTTCCTGAGGACGAGGATGCACCAGCGTAACGAGGATGAT GGTGCTGCCTACATCGGTGCATTAATATTCGCGATGATCCACAACATGTTTAACGGGTTTGCTGAGCTTTCATTGATGATCAAGAGGCTCCCTGTGTTCT ACAAGCAGAGGGATTTGCTGTTCCAGCCTGCTTGGACTTTTACTTTGCCTACGTTCTTGCTTGGAGTCCCGTCCTCGATCTTGGAGTCCACGGTGTGGAT GGTTGTGACATACTACACCGTTGGATATGCTCCAGAGGCGAGCAGATTCTTCAAGCAGTTTCTTGTGGTGTTCTTGATCCAGCAGATGGCTGCTGGTTGC TTTAGGCTCATTGCTGGTGTTTGCAAGACTTTCATCATTGCCAACACTGGTGGTGCTCTCACCCTTCTTCTAATTTTCTTGCTTGGTGGCTTCATCTTGC CAAAAGGAGAAATCCCAGTATGGTGGGAATGGGCTTACTGGGTATCCCCATTGTCATATGGTTACAATGCAATGGCAGTCAATGAAATGACTGCCCCAAG GTGGATGAACAGGCTGGCATCAGACAACTCCACTAGCTTGGGTATACAAGTGCTCCGAAATTTCGATATCCCCACGGACAAGAACTGGTACTGGATTGGG GTAGCAGCTCTTCTCGGATTCGCAGTCGTGTTCAATGTCCTCTTCACACTCGCCTTGATGTACTTTGCTCCTCCTGGGAAGCCGCAAGCAGTGATTTCGG AGGAAGAAGCCAAGGATATGGAAGGCGATTCCAAACGTACTCCAAGGCTTGTGAGGTTGGAATCAAACAAGGATGAACTTCCTAGAGTATCATTATCTAC TGCTGATGGAAATAACTCGAGAGAGATGGGAGCTATGAGAATGAGTAGCCATAGCAATCCGAATGGAACCGATTCGTTCGACGCAGAATCAGGTGGTGTT GCTGCCAAAAGAGGGATGGTTCTCCCTTTCACTCCTTTAGCCATGTCTTTCGACAGTGTCAACTACTACGTTGACATGCCACCGGAAATGAAGGAGCAAG GAGTTGCAGAGGATAGGCTACAGTTGCTCCGGGAAGTGACAAGCTCGTTCCGTCCTGGAGTGCTGACAGCATTGATGGGAGTGAGTGGAGCTGGAAAGAC AACTCTGATGGATGTTCTAGCCGGAAGGAAGACCGGTGGATATATCGAAGGCGATATCAGAATCTCGGGGTACCCCAAGAACCAAGAAACTTTCGCAAGA ATCGCAGGATACTGCGAGCAGACCGATATCCATTCCCCACAAGTCACCGTTAGAGAGTCATTGATCTTCTCAGCTTTCCTCAGGCTGCCTAAAGATGTCG ACAAAGACGAAAAGATGAAATTTGTTGACCAAGTAATGGAGCTTGTGGAGCTGGACAACTTGAAAGATGCAGTAGTTGGACTTCCAGGAGTCACTGGTTT GTCAACTGAGCAAAGAAAAAGGTTGACTATTGCAGTGGAGCTTGTTGCAAACCCTTCAATCATTTTCATGGACGAGCCGACATCTGGCCTCGATGCACGA GCTGCAGCTATCGTCATGAGAACTGTCAGGAACACAGTCGATACCGGAAGAACAGTTGTCTGCACCATTCATCAGCCTAGCATCGACATATTCGAAGCTT TCGACGAGTTGCTCCTGATGAAGAGAGGTGGACAAGTCATCTATGCTGGACCATTGGGGCGAAACTCGCACAAGATTGTCGAGTATTTCGAGTCAATTCC TGGTGTCCCTAAAATCAAGGAGAAGTACAATCCTGCAACATGGATGCTTGAAGTGAGCTCAATTGCTGCTGAGGTTCGCCTCGGAATCGATTTCGCTGAG CATTACAAGCAATCAGCATTGTGCCAGAGAAACAAGACAATAGTGAAGGATTTGAGCACGCCACCAACCGGATCGAAAGATCTTTACTTTGCCACCAAAT TCTCCCAAGCAACTTGGGGACAGTTCAAATCTTGCTTGTGGAAACAATGGTGGACATATTGGAGAAGTCCTGACTATAACTTGGTCAGATTCTTCTTCAC ATTGGCTGCTGCACTTATGGTCGGGACGATCTTCTGGAAAGTCGGGACCAAAAGGGATAGCAGCAGTGATCTCACCATGGTCATTGGAGCTATGTACGCT GCTGTGTTGTTCATAGGCATCAACAACTGCTCGTCGGTGCAGCCAATCGTAGCGGTCGAGAGGACTGTGTTCTATCGCGAAAGAGCAGCAGGAATGTACT CGGAATTGCCATACGCTCTCTCGCAGGTCATAGCTGAGATTCCATATGTGTTGGTTCAGACTACATACTACACATTGATTGTGTATGCAATGATGGCATT CCAATGGACAGCAGCAAAGTTCTTGTGGTTCTACTTCATCAGCTTTTTCTCATTCCTCTACTTCACTTACTATGGCATGATGACTGTATCGGTCACTCCG AATCACCAAGTGGCGGCCATTTTCGCTGCAACGTTCTATGCTCTGTTCAATCTCTTCTCCGGCTTCTTCATCCCTAGGCCGAGGATTCCAAAGTGGTGGG TATGGTACTACTGGATCTGCCCCGTGGCGTGGACAGTTTACGGGCTGATATTGTCGCAGTACGGGGATGTAGAGGACACGATTCGTGTCCCCGGAGTGTC TCCTGACCCGACGATCAAGTGGTACGTGGAGAACCACTTTGGTTACAACCCCAACTTCATGGCTCCTGTTGCTATAGTGCTGGTTGCCTTCACTTCCTTC TTTGCATTTGTGTATGCTTACTGCATCAAGACACTCAACTTCCAGACAAGGTAA
AA sequence Show only first row Show all	>Lus10037562 pacid=23167318 polypeptide=Lus10037562 locus=Lus10037562.g ID=Lus10037562.BGIv1.0 annot-version=v1.0 MEGSERVRASGRRSVTRSISRSLSRASWSMEEVFAGGNSRRSSTHGDEDEEALKWAAIERLPTYDRLRTTIMKSVMEDNNAEGMFRGHKQVDVARLGDGD RHQLTGLDNRVRHLVAGKVVYKILNRLYYLVALRIPVEYLAEIVTMATLSLVMVNRVGIQLPKVEVRFEHLTIEADCYIGDRALPTLPNVARNIVESGLN KIGIHLAKRTKLTILKDVSGIIKPSRMALLLGPPSSGKTSLLLAMAGKLDPNLKVKGSITYNGHTMKEFVPRKTSAYISQNDVHVAEMTVKETLDFSARC LGVGTRYDLLSELGRREKEAGIFPEAEVDLFMKATAMKGAESTLNTDYTLKILGLDICKDTIVGDDMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG LDSSTTYQIVKCLQQIAHLTDATILMSLLQPAPETFDLFDDIILLSEGQVVYQGPRENILEFFASCGFRCPERKGTADFLQEVTSRKDQEQYWAHRDRPY QYVSVADLVAKFKTFHVGMRQDNDLSVPFNKSLGHKAALVYKKYTVPKLDLLKASWDKEWLLMKRNSVVYVSKTIQMIVVALIASTVFLRTRMHQRNEDD GAAYIGALIFAMIHNMFNGFAELSLMIKRLPVFYKQRDLLFQPAWTFTLPTFLLGVPSSILESTVWMVVTYYTVGYAPEASRFFKQFLVVFLIQQMAAGC FRLIAGVCKTFIIANTGGALTLLLIFLLGGFILPKGEIPVWWEWAYWVSPLSYGYNAMAVNEMTAPRWMNRLASDNSTSLGIQVLRNFDIPTDKNWYWIG VAALLGFAVVFNVLFTLALMYFAPPGKPQAVISEEEAKDMEGDSKRTPRLVRLESNKDELPRVSLSTADGNNSREMGAMRMSSHSNPNGTDSFDAESGGV AAKRGMVLPFTPLAMSFDSVNYYVDMPPEMKEQGVAEDRLQLLREVTSSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQETFAR IAGYCEQTDIHSPQVTVRESLIFSAFLRLPKDVDKDEKMKFVDQVMELVELDNLKDAVVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRNSHKIVEYFESIPGVPKIKEKYNPATWMLEVSSIAAEVRLGIDFAE HYKQSALCQRNKTIVKDLSTPPTGSKDLYFATKFSQATWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRDSSSDLTMVIGAMYA AVLFIGINNCSSVQPIVAVERTVFYRERAAGMYSELPYALSQVIAEIPYVLVQTTYYTLIVYAMMAFQWTAAKFLWFYFISFFSFLYFTYYGMMTVSVTP NHQVAAIFAATFYALFNLFSGFFIPRPRIPKWWVWYYWICPVAWTVYGLILSQYGDVEDTIRVPGVSPDPTIKWYVENHFGYNPNFMAPVAIVLVAFTSF FAFVYAYCIKTLNFQTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10037562 [exp]	0	1
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	4.5	0.7343
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	5.5	0.7416
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	10.1	0.7294
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	13.3	0.7196
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10007833 [exp]	14.3	0.6754
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	18.7	0.7129
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	25.7	0.6703
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	30.2	0.6040
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	32.2	0.6888
AT3G09830			Protein kinase superfamily pro...		Lus10026523 [exp]	32.6	0.6459

Compare expression of checked genes

Lus10037562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.