Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15215 129 / 2e-37 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein AT3G18380 92 / 4e-22 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014151 [exp] 207 / 1e-66 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10038276 [exp] 130 / 3e-37 AT1G15215 266 / 3e-89 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10025826 [exp] 99 / 6e-25 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10013684 [exp] 90 / 3e-21 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10017944 [exp] 89 / 9e-21 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10005480 [exp] 67 / 2e-14 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189200 [exp] 124 / 3e-35 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.018G046200 [exp] 112 / 1e-30 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.011G097500 [exp] 87 / 2e-20 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.001G373300 [exp] 84 / 4e-19 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037564 pacid=23167116 polypeptide=Lus10037564 locus=Lus10037564.g ID=Lus10037564.BGIv1.0 annot-version=v1.0 ATGCCTATCGACATGCTCGTCATCGATGATCTACCGCACAACATTCCTGTTCTGCCAAAGCCTAAAGGCACTGATTTTGACCGGTTTAATTTTCGTTGTA TGTGCTGTATCATACATACAGTTTTAACACAATGTTCTGAATTGTCAGCTTGGAAAACTGGTGCCAAGGCTGCTGATCTATCTGAGCTGATATTCGAAGC CAAATCAACCAGAGACGATGCTTGGTTCGATGTCGGTACATCCCTCAACTACAGAGTTCTTTATACTGGTCACCTTGAGGTGAAAGTTCGTTTCGATGGG TTCGACTATGGTCACGACGAGTGGGTCAATCTGAAGACAGGCGTCCACGAGAGGTCCATTCCTCTAGAGCCCTCGGAGTGCCACAAGGTCAGCGTTGGAG ACCTCGTACTGTGCTACCGGGTTCGGTACGATCTCGATGATGTGCAGGAGAACGTTGGGTTGGATGGATCTGCTGCAGGCCAGGGAGTGGGGCTAGTAGT AGTTGTAGTAGCAGCAGCAGCAGCAGCAGCCAGAAAACCCAACTGCCTCCCAAAAGCATCTTTTACTAGAGAGATCAAAATCAATGAAGGCTTTTAA
AA sequence Show only first row Show all	>Lus10037564 pacid=23167116 polypeptide=Lus10037564 locus=Lus10037564.g ID=Lus10037564.BGIv1.0 annot-version=v1.0 MPIDMLVIDDLPHNIPVLPKPKGTDFDRFNFRCMCCIIHTVLTQCSELSAWKTGAKAADLSELIFEAKSTRDDAWFDVGTSLNYRVLYTGHLEVKVRFDG FDYGHDEWVNLKTGVHERSIPLEPSECHKVSVGDLVLCYRVRYDLDDVQENVGLDGSAAGQGVGLVVVVVAAAAAAARKPNCLPKASFTREIKINEGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10037564 [exp]	0	1

Compare expression of checked genes

Lus10037564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.