Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25760 962 / 0 Protein kinase family protein (.1.2) AT5G18190 916 / 0 Protein kinase family protein (.1) AT3G13670 912 / 0 Protein kinase family protein (.1) AT3G03940 910 / 0 Protein kinase family protein (.1) AT3G03930 347 / 5e-115 protein kinase-related (.1) AT4G26100 203 / 4e-58 CKL1, CK1 casein kinase 1 (.1) AT5G57015 201 / 1e-57 CKL12 casein kinase I-like 12 (.1) AT1G72710 200 / 5e-57 CKL2 casein kinase 1-like protein 2 (.1) AT2G19470 199 / 5e-57 CKL5 casein kinase I-like 5 (.1) AT1G03930 197 / 9e-56 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014152 [exp] 1270 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 1065 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10005479 [exp] 961 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10042455 [exp] 932 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 930 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 894 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 848 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10024261 [exp] 847 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10011091 [exp] 841 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G046400 [exp] 995 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 979 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 943 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.001G009700 [exp] 929 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G049700 [exp] 924 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.003G215700 [exp] 922 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.019G034500 [exp] 920 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.018G065900 [exp] 210 / 2e-60 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 209 / 2e-60 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 207 / 2e-59 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037565 pacid=23167325 polypeptide=Lus10037565 locus=Lus10037565.g ID=Lus10037565.BGIv1.0 annot-version=v1.0 ATGCCGGTTCTGCGTAGCGGAATGCGCAGGGGCCGGAGAGCAGCAGCAGCAGCAGCTAATCACCAGCAGACGCCGATTCCTGTCCAAACAGGAGAAGCGA TTGCGACGAGAACTCGCCGGAGGCGCGCGGCGGCGGCTGTAAACGACTTGACTAATAATCAGGCTGTAGCTCAGGCGCCTGTAGTAGCGGCGGCGGGGCC AGCGGAGGAGAACAGACATAGGCAAGAGGAAGGGGAAAATAGAATGGCTGACTGTGGTGTTGGTGGGAGAAGCAACGACAAGGGAAATGCTGCCGATGAT GAAGGAAGCGCAAACCCCATTCCAGAGAAGGTTCAGGTTGGAGGTTCACCATTGTACAGAGTAGAAAATAAGTTGGGCAAAGGAGGTTTTGGTCAAGTAT ATCTTGGTCGACGTGTTAGTGGTGGCCCAGGGCCTCTAGAGGTGGCATTAAAATTTGAGCATAGAAACAGTAAAGGATGTAATGGAGGACCGCCTCAAGA GTGGCAGCTTTACAGCAATCTTGGGAGCTGTCATGGTGTCCCTCAAGTTCACTTCAAGGGACTGCACAGTGACTATTATATTATGGTTATGGACATCCTT GGGCCAAGCTTGTGGGATGTTTGGAATAATAACTCTCAGACGATGGCCGTTGATTTGGTTGCATGTATAACCATTGAAGCAATATCCATATTGGAGAAGG TGCACTCTAAAGGGTATGTCCATGGAGATATAAAGCCTGAGAATTTCCTGCTTGGTCAACCTGGAACTCATGAATCGAAAAAGCTGTATCTTGTCGACCT TGGATTAGCCACTAGATGGCGAGATAGGTCTACTGGTCAGCATGTTGAGTATGATCAAAGGCCAGACGTCTTCAGAGGAACAGTGCGGTATGCCAGTGTC CATGCTCATTTGGGGAGAACTGCAAGTCGGAGAGATGATCTAGAGTCTCTGGCTTACACATTGGTTTTCCTTCTCCGTGGTCGATTGCCTTGGCAAGGTT TCCAGGGGGACAATAAAGGTTTTCTTGTATTGAAGAAAAAGATGGCCACATCCCCAGAATCACTGTGCTGCTTTTGCCCGTTGCCTTTCAAAAACTTTGT TGAATACGTGGTGAATCTCAAGTTCGATGAGGAACCCGATTATGCAAAATGCATTTCCTTCTTTGATGAAATCGTTGGTCGAAATCCAAATGTACGACCA ATTTACACAGATGGTGCTCAGAAGGTTGGCCGAAAAAGAGGACGGTTAACCATGGAGGATAATGGGGATGAACAGCCTAGAAAGAAGATTAGGACAGGCA TGCCAGCATGTCAATGGATCAGTGTATACAGTGCTCGCCGGCCCATGAAGCAGAGGTATCATTATAATGTCGGCGAGTCGAGACTGGCTCATCATATCGA AAAAGGAAATGAAGATGAATTATGTATTAGTAGCGTTGCTTCAGCTCAAAACTTATGGGCACTTATCATGGATGCTGGTACCGGGTTTATGGAACAAGTC TACAACCTCTCACCCAATTTTCTAAACAAGGATTGGATAATGGAACAATGGGAGAAGGGCTATTACATCAATGCCTTAGCTGGAGCTACCAATGGAAACT CATTAGTGGTGATGTCCAAAGGTACATCATATCAGCAACAGTCATATAAAGTGACTGAAACCTTCCCTTCCAAATGGATCAGCAGAAAATGGAAGGAGGG ATTCCATGTCACCTCAATGGCTACCTCGGGGAGCAAATGGGCAATCGTCGTGTCTCGAGGAGCTGGGTTTTCTCATCAGGTTGTGGAGCTTGATCTTCTG TACCCGAGCGAAGGGATCCACCGACGATGGGAGAAGGGGTACCGTATCACATCGACTGCAGCAACCTACGACCAGGCTGCATTTGTCCTCAGTATACCTA GAAGAAAACCGCAAGACGAAACCCAGGAGACTCTTCGAACCTCTACATTCCCTAGTGATCATGTCAAGGAGAAATGGGCAAAGAGTCTGTACATTTCATC GATATGTTTCGGACGAACAGTATCTTGA
AA sequence Show only first row Show all	>Lus10037565 pacid=23167325 polypeptide=Lus10037565 locus=Lus10037565.g ID=Lus10037565.BGIv1.0 annot-version=v1.0 MPVLRSGMRRGRRAAAAAANHQQTPIPVQTGEAIATRTRRRRAAAAVNDLTNNQAVAQAPVVAAAGPAEENRHRQEEGENRMADCGVGGRSNDKGNAADD EGSANPIPEKVQVGGSPLYRVENKLGKGGFGQVYLGRRVSGGPGPLEVALKFEHRNSKGCNGGPPQEWQLYSNLGSCHGVPQVHFKGLHSDYYIMVMDIL GPSLWDVWNNNSQTMAVDLVACITIEAISILEKVHSKGYVHGDIKPENFLLGQPGTHESKKLYLVDLGLATRWRDRSTGQHVEYDQRPDVFRGTVRYASV HAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGFQGDNKGFLVLKKKMATSPESLCCFCPLPFKNFVEYVVNLKFDEEPDYAKCISFFDEIVGRNPNVRP IYTDGAQKVGRKRGRLTMEDNGDEQPRKKIRTGMPACQWISVYSARRPMKQRYHYNVGESRLAHHIEKGNEDELCISSVASAQNLWALIMDAGTGFMEQV YNLSPNFLNKDWIMEQWEKGYYINALAGATNGNSLVVMSKGTSYQQQSYKVTETFPSKWISRKWKEGFHVTSMATSGSKWAIVVSRGAGFSHQVVELDLL YPSEGIHRRWEKGYRITSTAATYDQAAFVLSIPRRKPQDETQETLRTSTFPSDHVKEKWAKSLYISSICFGRTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Lus10014152 [exp]	2.8	0.7804
					Lus10024539 [exp]	11.1	0.7786
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10006651 [exp]	11.7	0.8014
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10039063 [exp]	13.3	0.6482
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	14.5	0.7508
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	17.7	0.7364
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	18.5	0.7402
AT5G49840			ATP-dependent Clp protease (.1...		Lus10010691 [exp]	19.0	0.7475
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	23.4	0.7590
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	34.6	0.6966

Compare expression of checked genes

Lus10037565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.