Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29110 66 / 8e-14 unknown protein AT1G52140 65 / 3e-13 unknown protein AT3G16330 60 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014153 [exp] 249 / 6e-86 AT4G29110 84 / 1e-20 unknown protein Lus10038274 [exp] 145 / 2e-44 AT3G16330 124 / 2e-35 unknown protein Lus10025828 [exp] 120 / 1e-34 AT1G52140 138 / 8e-41 unknown protein Lus10012967 [exp] 57 / 1e-10 AT1G52140 105 / 5e-29 unknown protein Lus10034944 [exp] 57 / 1e-10 AT1G52140 100 / 3e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188900 [exp] 108 / 5e-30 AT1G52140 127 / 2e-36 unknown protein Potri.003G049800 [exp] 100 / 6e-27 AT1G52140 129 / 1e-37 unknown protein Potri.018G086500 [exp] 92 / 1e-23 AT4G29110 139 / 3e-41 unknown protein Potri.014G139900 [exp] 50 / 7e-08 AT1G52140 87 / 3e-21 unknown protein Potri.006G236700 [exp] 46 / 2e-06 AT4G32860 94 / 4e-24 unknown protein Potri.018G046500 [exp] 45 / 3e-06 AT1G52140 94 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037566 pacid=23167223 polypeptide=Lus10037566 locus=Lus10037566.g ID=Lus10037566.BGIv1.0 annot-version=v1.0 ATGGAGCAATCCCTACCGTTGGTGGCCAAGAAAGCATGGGGGATGGTACGTGTCCTCCTCTTCATGGTACGCAGATCCATCGTCTCCAAGAGAAAGCTCC TCCTCCTCGACCTCAACATGGCCATCAAACGTGGCAACAAACTCGCCTCCAAGGCCATCGGCAACCTCAAGTTCCACCACCACCACAACCACCGCGCCCC CGCCGTCGCTGACACCGTGGAGGAAGCGGCAGGGGCGGCCGAGGAGGCTGTTAAGATGGCGTTGGAGATGATGAACAACGCCAGTGGTGATGACGGTGGA GGTGGTGGTGGGAATGTGTACGCTGCGACGCCGTCGCCGGTGGTGCTGCCACGGCGGCGGAAGGGTGTCACGAGGAGTTTGAGGATAACGGACTCGCCGT TTCCGTTGAGGGAGGATGACGGAGGAGATAACGGCGCTGTGGATAGGAAAGCGGATGAGTTCATTGCTAATTTCTACAGGCAGCTTCAACGGCAGCAGTA G
AA sequence Show only first row Show all	>Lus10037566 pacid=23167223 polypeptide=Lus10037566 locus=Lus10037566.g ID=Lus10037566.BGIv1.0 annot-version=v1.0 MEQSLPLVAKKAWGMVRVLLFMVRRSIVSKRKLLLLDLNMAIKRGNKLASKAIGNLKFHHHHNHRAPAVADTVEEAAGAAEEAVKMALEMMNNASGDDGG GGGGNVYAATPSPVVLPRRRKGVTRSLRITDSPFPLREDDGGDNGAVDRKADEFIANFYRQLQRQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52140			unknown protein		Lus10037566 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10019694 [exp]	7.1	0.7925
AT3G11640			unknown protein		Lus10021290 [exp]	12.6	0.7509
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	12.6	0.7770
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	14.8	0.7428
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	15.2	0.7761
AT5G27990			Pre-rRNA-processing protein TS...		Lus10027901 [exp]	22.4	0.6765
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	23.7	0.7724
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	24.7	0.7710
AT1G76660			unknown protein		Lus10025171 [exp]	24.9	0.7752
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	25.5	0.7561

Compare expression of checked genes

Lus10037566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.