Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011425 [exp] 157 / 2e-46 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037567 pacid=23167070 polypeptide=Lus10037567 locus=Lus10037567.g ID=Lus10037567.BGIv1.0 annot-version=v1.0 ATGACTTTGGCCATCGGCCGGCGATTCCTCTCGCCATCGACGCCAACTGCTCTTCCTCATCTCTTTTCGGTAGAAACTCTTCCTCATCTCTTATTACGTC GCAATATCACAACCCACTTACCTACCCTCAGTTCGGTTCTGCCATGTCATCACCGACGACGACAAAACCAAGGCGGAGGAGTCAACTTCCAACCTGGAAA AGAACCAGCAGTTATGAATCCCCCCAGCCTCTACCTCGGTGGAATCAATAACAACATTAGCAGTCGAATCTTGGAAATATTCCACCAACGACGGAGTATC TCTTCGTCGCAGGTGTCGACTCCGCCTGAAGAAGACCACGTTCCCGATCAGGAAGAATCGAAAGCGAGTTACGACGAGCAAAAGGTCGAGGCCAATAACA AGATTGAAGAGAAAGAGGATGCCAAATCAGCAGCAACAACAACAGAAATGACCGTGATGGACCAGGACGACAACGAGGAGGAGGAGGAAGCGAAAGAACC GCCGCCTCCGAAACTGATAAACATACTATATATGGCAGCGGTGGGTGTGTTTTTGATATGGTTGTCACAGAAACCACCAAGTTTTATCCCAGAAAACGAC CCTAATTCATCCGGGGAAGCATCAATAACCTTCTCTGGCCTGGAACAGAGTACTAAAACTATGTTGGAGAGCATCTTGGAGGCAATCTGGATACCCTTCT TCAATCTGGCCTGGAAAATTATGTTTATGGATCAATTGATGTTCGTAATCTGGTCGGTGTTCGTCGAGATGTTTCCAGTTAGCTTGCTGCTCCTGCCAGT ACTCATTACTTGTATCATCCATCTATTGGGCGCTGTCTTCTTTGTATCGATCGGGGTTTTTCTGGCCGCGATATGGATGCTCCTAAGGTTTTTCAAATAT TGCCGGAGGTACATTGCCTACCAGCGGCGACGACGAGGAAGATGA
AA sequence Show only first row Show all	>Lus10037567 pacid=23167070 polypeptide=Lus10037567 locus=Lus10037567.g ID=Lus10037567.BGIv1.0 annot-version=v1.0 MTLAIGRRFLSPSTPTALPHLFSVETLPHLLLRRNITTHLPTLSSVLPCHHRRRQNQGGGVNFQPGKEPAVMNPPSLYLGGINNNISSRILEIFHQRRSI SSSQVSTPPEEDHVPDQEESKASYDEQKVEANNKIEEKEDAKSAATTTEMTVMDQDDNEEEEEAKEPPPPKLINILYMAAVGVFLIWLSQKPPSFIPEND PNSSGEASITFSGLEQSTKTMLESILEAIWIPFFNLAWKIMFMDQLMFVIWSVFVEMFPVSLLLLPVLITCIIHLLGAVFFVSIGVFLAAIWMLLRFFKY CRRYIAYQRRRRGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037567 [exp]	0	1
AT1G47790			F-box and associated interacti...		Lus10031533 [exp]	1.4	0.9918
					Lus10015244 [exp]	3.5	0.9766
					Lus10033479 [exp]	5.5	0.9649
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10036516 [exp]	8.4	0.9597
					Lus10042586 [exp]	10.5	0.9216
					Lus10027902 [exp]	15.7	0.9730
AT5G67620			unknown protein		Lus10019264 [exp]	17.7	0.9273
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10040256 [exp]	18.2	0.9680
AT5G09550			GDP dissociation inhibitor fam...		Lus10035634 [exp]	20.5	0.9587
					Lus10017551 [exp]	22.0	0.9344

Compare expression of checked genes

Lus10037567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.