Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52150 1412 / 0 HD ATHB15, ICU4, CNA, ATHB-15 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) AT4G32880 1328 / 0 HD ATHB8, ATHB-8 homeobox gene 8 (.1) AT2G34710 1103 / 0 HD ATHB14, PHB-1D, ATHB-14, PHB PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G30490 1084 / 0 HD ATHB9, PHV PHAVOLUTA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT5G60690 1062 / 0 HD IFL1, REV REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) AT1G79840 99 / 7e-21 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G00730 85 / 1e-16 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT5G52170 84 / 3e-16 HD HDG7 homeodomain GLABROUS 7 (.1) AT4G04890 83 / 5e-16 HD PDF2 protodermal factor 2 (.1) AT3G61150 83 / 6e-16 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011426 [exp] 1565 / 0 AT4G32880 1338 / 0.0 homeobox gene 8 (.1) Lus10011616 [exp] 1233 / 0 AT4G32880 1293 / 0.0 homeobox gene 8 (.1) Lus10021470 [exp] 1096 / 0 AT5G60690 1419 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10000719 [exp] 1093 / 0 AT5G60690 1409 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10023357 [exp] 1087 / 0 AT2G34710 1316 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10038449 [exp] 1076 / 0 AT2G34710 1336 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Lus10002037 [exp] 996 / 0 AT1G52150 1049 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Lus10006765 [exp] 121 / 6e-28 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10020059 [exp] 118 / 4e-27 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188800 [exp] 1491 / 0 AT1G52150 1476 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.003G050100 [exp] 1470 / 0 AT1G52150 1488 / 0.0 INCURVATA 4, CORONA, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2.3) Potri.006G237500 [exp] 1395 / 0 AT4G32880 1412 / 0.0 homeobox gene 8 (.1) Potri.018G045100 [exp] 1395 / 0 AT4G32880 1400 / 0.0 homeobox gene 8 (.1) Potri.001G372300 [exp] 1171 / 0 AT2G34710 1358 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.011G098300 [exp] 1163 / 0 AT2G34710 1350 / 0.0 PHABULOSA 1D, PHABULOSA, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 14, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.009G014500 [exp] 1097 / 0 AT5G60690 1382 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.004G211300 [exp] 1067 / 0 AT5G60690 1375 / 0.0 REVOLUTA, INTERFASCICULAR FIBERLESS 1, INTERFASCICULAR FIBERLESS, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1) Potri.002G230200 [exp] 114 / 1e-25 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 112 / 3e-25 AT4G04890 1185 / 0.0 protodermal factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF08670 [flax] [poplar] MEKHLA MEKHLA domain CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10037568 pacid=23167024 polypeptide=Lus10037568 locus=Lus10037568.g ID=Lus10037568.BGIv1.0 annot-version=v1.0 ATGGCAATGTCTTATAAAGATGGGAATAAGAATGCTCAGATGGGGAACTTGGATAATGGGAAGTATGTTCGTTACACCCCTGAGCAGGTTGAAGCTCTTG AGAGGCTCTATCTCGAGTGTCCTAAGCCCAGCTCCATTCGCCGCCAGCAGTTCATTCGAGACTGCCCTACCCTCTCCAACATAGAACCTAAACAGATCAA AGTTTGGTTCCAGAACCGAAGATGTAGGGAGAAGCAAAGGAAAGAGTCATCACGGCTTCAAGGCGTGAATCGGAAGCTGACGGCAATGAACAAGCTTCTG ATGGAAGAAAACGATAGGTTGCAGAAGCAAGTGTCACATCTGGTGTATGAGAACAGCTACTTTCGCCAGCATACCCAGAAAACGTCACCTTCAACCAAAG ACGCAGGCTGTGATTCAGTGGTCACAACTGGTCAACATCACTTGACACCTCAGCATCCTCCAAGGGATGCTAGTCCTGCAGGGCTATTGTCCATTGCAGA AGAAACTTTAACAGAGTTTATTTCTAAGGCTACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTT GCTATTTCTCATGGTTGCATTGGTGTGGCAGCACGAGCCTGCGGCCTAGTGGGTCTAGAACCCACAAGGGTAGCAGAAATCCTCAAAGATCGACCTTCGT GGTTTCGCGATTGTCGGTCTGTGGATGTTGTGAACGTGTTGCCAACAACTAATGGTGGAACAATCGAGCTACTTTACATGCAGCTCTATGCTCCAACAAC TCTGGCACCTGCACGTGATTTCTGGTTGTTGCGTTACACTTCAGTACTGGAAGATGGTAGTCTTGGGATATGTGAGAGGTCACTTAAGAACACTCAAAAT GGTCCTAGCATGCCGCCAGCGCAGCATTTCGTAAGAGCAGAAATGCTGCCTAGTGGGTACCTGATACGACCTTGTGAAGGGGGCGGCTCAATCATTCACA TAGTTGATCATGTAGATTTGGAGCCATGGAGCGTGCCTGAAGTTCTACGTCCACTCTACGAGTCATCTATAGTGCTTGCTCAAAAGACAACGATGGCTGC TTTGCGTCATCTGAGGCAGATAGCACAGGAGTTTTCTCAGACTAATGTAAGCAACTCTGGTAGACGACCAGCAGCCCTGCGGGCTTTGAGCCAGAGGTTG AGCAGGGGTTTCAATGAGGCTCTCAACGGGTTCACTGATGAGGGATGGTCAATGCTTGGAAATGATGGAATGGATGATGTTACTATTCTTGTTAATACGT CGCCTGATAAACTGATGGGTTTAAATCTTCCCTTCTCTAATGGGTTTCAATCTGTTACGAATTCAGTTTTATGTGCCAAAGCATCAATGCTTTTGCAGAA TGTTCCTCCTGCGATACTGCTCAGGTTCTTGCGCGAGCACAGATCAGAATGGGCAGATAACGGCATTGATGCCTACTCAGCTGCGGCAATCAGAGTTGGT CCCTGTAGCTTGCCTGGTGCTCATGTCGGCAGTTTTGGTGGACAGGTTATACTTCCTTTGGCCCAGACGATGGAGCATGAAGAGTTCTTGGAGGTTGTTA AACTGGAAAGCGTTGTGAATTCCCCTGAAGAAGCAATGATGCCACCTAGGGACATATTTCTCTTACAACTATGCAGTGGAATGGATGAAAACGCTATTGG AACCTGTGCTGAACTCATATTTGCTCCAATTGATGCATCTTTCGCTGACGATGCGCCCCTGCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGA AAGGAAGCCACGAGTCCAAATCGCACGCTGGACCTTGCATCTGCACTTGAAATAGGACCGGCTGGGAGCAAGGGAGCAAAGGATTCGTCTACTAGCTCTG GCAGTGTTAGATCAGTGATGACTATTGCATTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTAGCTGTCATGGCTCGTCAGTATATCCGGAGCAT CATATCCTCGGTCCAGAGGGTGGCATTGGCTCTTTCCCCTTCCAACTTGGGTTCACTTGCTGGTCTTCGTTCATCGCTAGGCACACCTGAAGCACAGACT CTTGCTCGTTGGATCAACCAAAGTTATAGAGTTTACTTGGGTGTGGAGCTGCTCAAGTCCAACAGCGAAGGAGGAGGTGGTGAATCGATCCTCAAATCCC TGTGGCATCACTCTGATGCAATGTTATGCTGCTCTCTAAAGGCAATGCCGGTGTTCACGTTCGCGAATCAGGCGGGGCTTGACATGCTGGAAACAACCTT GGTTGCTTTACAGGACATAAATCTAGAGAAGATCTTTGACGACAATGGAAGGAAGACTCTATGCTCAGAGTTCCCTCAGATCATCCAACAGGGATATGCA TGTCTTGCTGGCGGTATCTGCATGTCGAGCATGGGAAGGCCTGCGTCGTACGAGAAGGCGGTGGCGTGGAAAGTGTTGAACGAGGAAGAGAATGCACACT GCATCTGCTTCATGTTTGTGAACTGGTCTTTTGTTTAA
AA sequence Show only first row Show all	>Lus10037568 pacid=23167024 polypeptide=Lus10037568 locus=Lus10037568.g ID=Lus10037568.BGIv1.0 annot-version=v1.0 MAMSYKDGNKNAQMGNLDNGKYVRYTPEQVEALERLYLECPKPSSIRRQQFIRDCPTLSNIEPKQIKVWFQNRRCREKQRKESSRLQGVNRKLTAMNKLL MEENDRLQKQVSHLVYENSYFRQHTQKTSPSTKDAGCDSVVTTGQHHLTPQHPPRDASPAGLLSIAEETLTEFISKATGTAVEWVQMPGMKPGPDSIGIV AISHGCIGVAARACGLVGLEPTRVAEILKDRPSWFRDCRSVDVVNVLPTTNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLGICERSLKNTQN GPSMPPAQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLEPWSVPEVLRPLYESSIVLAQKTTMAALRHLRQIAQEFSQTNVSNSGRRPAALRALSQRL SRGFNEALNGFTDEGWSMLGNDGMDDVTILVNTSPDKLMGLNLPFSNGFQSVTNSVLCAKASMLLQNVPPAILLRFLREHRSEWADNGIDAYSAAAIRVG PCSLPGAHVGSFGGQVILPLAQTMEHEEFLEVVKLESVVNSPEEAMMPPRDIFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSG KEATSPNRTLDLASALEIGPAGSKGAKDSSTSSGSVRSVMTIAFEFAFESHMQEHVAVMARQYIRSIISSVQRVALALSPSNLGSLAGLRSSLGTPEAQT LARWINQSYRVYLGVELLKSNSEGGGGESILKSLWHHSDAMLCCSLKAMPVFTFANQAGLDMLETTLVALQDINLEKIFDDNGRKTLCSEFPQIIQQGYA CLAGGICMSSMGRPASYEKAVAWKVLNEEENAHCICFMFVNWSFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10037568 [exp]	0	1
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	1.0	0.9728
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	1.4	0.9718
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	3.0	0.9614
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	9.5	0.9311
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	11.1	0.9553
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	11.2	0.9069
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Lus10021470 [exp]	11.8	0.8906
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10038930 [exp]	14.7	0.9453
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	17.8	0.9353
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	18.1	0.9273

Compare expression of checked genes

Lus10037568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.