Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25840 166 / 8e-53 Protein of unknown function (DUF1677) (.1) AT1G79770 144 / 2e-44 Protein of unknown function (DUF1677) (.1) AT2G25780 90 / 3e-23 Protein of unknown function (DUF1677) (.1) AT4G14819 86 / 2e-22 Protein of unknown function (DUF1677) (.1) AT3G22540 84 / 2e-21 Protein of unknown function (DUF1677) (.1) AT5G20670 82 / 5e-20 Protein of unknown function (DUF1677) (.1) AT1G72510 80 / 3e-19 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) AT1G54095 78 / 1e-18 Protein of unknown function (DUF1677) (.1) AT2G09970 73 / 1e-16 Protein of unknown function (DUF1677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011427 [exp] 293 / 6e-103 AT5G25840 172 / 5e-55 Protein of unknown function (DUF1677) (.1) Lus10006044 [exp] 155 / 2e-48 AT5G25840 175 / 2e-56 Protein of unknown function (DUF1677) (.1) Lus10000571 [exp] 153 / 1e-47 AT5G25840 174 / 9e-56 Protein of unknown function (DUF1677) (.1) Lus10013156 [exp] 97 / 6e-26 AT1G72510 157 / 2e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10006107 [exp] 96 / 1e-25 AT3G22540 155 / 2e-50 Protein of unknown function (DUF1677) (.1) Lus10010564 [exp] 93 / 8e-25 AT3G22540 151 / 1e-48 Protein of unknown function (DUF1677) (.1) Lus10008118 [exp] 94 / 1e-24 AT1G72510 157 / 1e-49 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10037683 [exp] 86 / 2e-21 AT1G72510 134 / 2e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Lus10015670 [exp] 80 / 3e-19 AT1G72510 139 / 7e-43 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050200 [exp] 207 / 7e-69 AT5G25840 152 / 3e-47 Protein of unknown function (DUF1677) (.1) Potri.001G188700 [exp] 204 / 9e-68 AT1G79770 157 / 2e-49 Protein of unknown function (DUF1677) (.1) Potri.018G045600 [exp] 162 / 2e-51 AT5G25840 157 / 3e-49 Protein of unknown function (DUF1677) (.1) Potri.001G166900 [exp] 99 / 7e-27 AT1G72510 190 / 2e-62 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.003G067800 [exp] 99 / 8e-27 AT1G72510 194 / 5e-64 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G237300 [exp] 97 / 1e-25 AT2G25780 122 / 6e-36 Protein of unknown function (DUF1677) (.1) Potri.010G086000 [exp] 92 / 2e-24 AT4G14819 136 / 3e-43 Protein of unknown function (DUF1677) (.1) Potri.008G154500 [exp] 89 / 3e-23 AT3G22540 133 / 1e-41 Protein of unknown function (DUF1677) (.1) Potri.006G219100 [exp] 78 / 8e-19 AT1G72510 131 / 7e-40 Protein of unknown function (DUF1677) (.1), Protein of unknown function (DUF1677) (.2) Potri.006G140600 [exp] 75 / 2e-17 AT5G20670 147 / 5e-46 Protein of unknown function (DUF1677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07911 [flax] [poplar] DUF1677 Protein of unknown function (DUF1677)
Representative CDS sequence Show only first row Show all	>Lus10037569 pacid=23167100 polypeptide=Lus10037569 locus=Lus10037569.g ID=Lus10037569.BGIv1.0 annot-version=v1.0 ATGACCAAAACCAACAACATCCAAAGGACGGTCTCCGACATCTCGTTCGAGCTGACCAAGATGGGAGCACTCGACCACCACCACCACCAGGCACCAGCAG CACCGGCACTCCCTGCGATCTCTGAGGTCGAGGATGCCAAGTGCGAGTGTTGTGGGATGAGCGAGGAGTGCACCCCGGAGTACATTGATCGGATCCGGTC CAAGTTCCTAGGCAAGCTGGTCTGCGGGTTGTGCTCGGAGGCTGTGAAGGAGGAGATGGCGAAGCCCGACCCTAAGAAAGGAGGGTTGGAGGAGGCACTA GGGATACATATGAGTGCATGCTCGAGGTTCAACAAGTTTGGGAGGGCTTACCCGGTGTTGTCTCAAGCCGAGGCGATGAGGGAGATGCTGAAGAAGAGCA CCAGAAGGGTGAAGTCATTTAACCCTAAGAGTGGTGCTCAGAAGATTGGTGGCCTTGCTAGGAGCTCAAGCTGTATCCCAGCCATCACAAGAGACTTGCA TCATGTCTAG
AA sequence Show only first row Show all	>Lus10037569 pacid=23167100 polypeptide=Lus10037569 locus=Lus10037569.g ID=Lus10037569.BGIv1.0 annot-version=v1.0 MTKTNNIQRTVSDISFELTKMGALDHHHHQAPAAPALPAISEVEDAKCECCGMSEECTPEYIDRIRSKFLGKLVCGLCSEAVKEEMAKPDPKKGGLEEAL GIHMSACSRFNKFGRAYPVLSQAEAMREMLKKSTRRVKSFNPKSGAQKIGGLARSSSCIPAITRDLHHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25840			Protein of unknown function (D...		Lus10037569 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	4.1	0.8881
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	4.2	0.8866
AT1G74875			unknown protein		Lus10023768 [exp]	5.3	0.8709
AT1G01300			Eukaryotic aspartyl protease f...		Lus10039126 [exp]	7.1	0.8851
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	7.5	0.8819
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	8.4	0.8787
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	13.3	0.8658
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10038857 [exp]	13.9	0.8772
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10015499 [exp]	17.9	0.8611
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	18.0	0.8445

Compare expression of checked genes

Lus10037569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.