Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30050 524 / 0 transducin family protein / WD-40 repeat family protein (.1) AT3G01340 511 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 71 / 7e-14 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 63 / 3e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26060 58 / 2e-09 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G64350 56 / 1e-08 SEH1H Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 56 / 1e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 53 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 52 / 3e-07 TAF5 TBP-associated factor 5 (.1) AT4G32990 51 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011429 [exp] 612 / 0 AT2G30050 525 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001904 [exp] 78 / 4e-16 AT1G64350 442 / 3e-157 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003896 [exp] 77 / 9e-16 AT1G64350 434 / 4e-154 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021365 [exp] 65 / 1e-11 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017045 [exp] 61 / 2e-10 AT2G26060 486 / 5e-174 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10042333 [exp] 59 / 8e-10 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 58 / 2e-09 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 58 / 3e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 58 / 3e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100400 [exp] 563 / 0 AT2G30050 517 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.015G068900 [exp] 562 / 0 AT2G30050 526 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G141300 [exp] 501 / 0 AT2G30050 465 / 2e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G221000 [exp] 72 / 3e-14 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G138300 [exp] 71 / 7e-14 AT1G64350 457 / 4e-163 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 68 / 1e-12 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 67 / 2e-12 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 63 / 5e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G144800 [exp] 57 / 5e-09 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.004G184900 [exp] 57 / 5e-09 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10037571 pacid=23167220 polypeptide=Lus10037571 locus=Lus10037571.g ID=Lus10037571.BGIv1.0 annot-version=v1.0 ATGCCTCTACAGAAGATTGAAACGGGTCATGAGGACACAGTCCATGATGTCCAAATGGATTACTACGGCAAAAGAATCGCAAGTGCTTCAGCTGACCACT CCATCAAGATTATCGGAGTGAGTAACAATACCTCTCAGCATCTAGCTAAGTTGACTGGCCACCAAGGCCCTGTTTGGCAAGTGTCTTGGGCACACCCTAA ATTTGGGTCCTTGCTGGCTTCGTGTTCTTACGATGGCCGGGTGATTCTGTGGAAAGAAGGTAATCCTAACGAGTGGATGCAAGCACATGTCTTTGATGAG CACAAGTCCTCGGTTAACTCTCTCGCTTGGGCTCCTCACGAATTGGGACTGTGTTTAGCCTGTGGGTCATCGGATGGAAACATATCGGTTTTCACTGCAC GAGCTGACGGTGGCTGGGACACATCAAAGATCGATCAAGCTCACCCGGTTGGAGTAACCTCTGTCTCGTGGGCTCCATCAACTGCTCCAGGTGCACTGGT GAGTTCGGGTTTACTCGACCCGGTCCAAAAGCTCTGCTCTGGTGGCTGTGACAACACTGTCAAAGTGTGGAAGCTGTACAATGGGACATGGAAGATGGAC TGCTTCCCTGCTCTCCAAATGCACAGTGACTGGGTGAGGGATGTCGCTTGGGCACCGAACTTGGGCCTCCCGAAATCGACCATTGCTAGTGCTTCTCAGG ATGGGAAGGTGATCATATGGACCGTGGCGAAAGAAGGAGAGCAGTGGGAAGGTAAAATCTTGAATGATTTCAACACTCCCGTTTGGAGGGTCTCGTGGTC TCTCACCGGTAACATCCTGGCCGTGGCCGATGGGAACAATGCCGTGACTCTGTGGAGAGAAGCTGTGGATGGGGAGTGGCAGCAGGTCACTACAGTTGAT TAG
AA sequence Show only first row Show all	>Lus10037571 pacid=23167220 polypeptide=Lus10037571 locus=Lus10037571.g ID=Lus10037571.BGIv1.0 annot-version=v1.0 MPLQKIETGHEDTVHDVQMDYYGKRIASASADHSIKIIGVSNNTSQHLAKLTGHQGPVWQVSWAHPKFGSLLASCSYDGRVILWKEGNPNEWMQAHVFDE HKSSVNSLAWAPHELGLCLACGSSDGNISVFTARADGGWDTSKIDQAHPVGVTSVSWAPSTAPGALVSSGLLDPVQKLCSGGCDNTVKVWKLYNGTWKMD CFPALQMHSDWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGEQWEGKILNDFNTPVWRVSWSLTGNILAVADGNNAVTLWREAVDGEWQQVTTVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	0	1
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Lus10022352 [exp]	1.0	0.9406
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	3.5	0.9337
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	4.7	0.9371
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10006325 [exp]	4.9	0.9132
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10017948 [exp]	4.9	0.8989
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	8.0	0.9324
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	8.4	0.9193
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	8.5	0.8857
AT5G52980			unknown protein		Lus10005024 [exp]	10.6	0.8659
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	12.0	0.8998

Compare expression of checked genes

Lus10037571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.