Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16310 446 / 4e-158 mitotic phosphoprotein N' end (MPPN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011431 [exp] 623 / 0 AT3G16310 461 / 3e-164 mitotic phosphoprotein N' end (MPPN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188300 [exp] 457 / 1e-162 AT3G16310 468 / 3e-167 mitotic phosphoprotein N' end (MPPN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF05172 [flax] [poplar] Nup35_RRM Nup53/35/40-type RNA recognition motif
Representative CDS sequence Show only first row Show all	>Lus10037573 pacid=23167151 polypeptide=Lus10037573 locus=Lus10037573.g ID=Lus10037573.BGIv1.0 annot-version=v1.0 ATGAGCAGTGCAGTGCGTAAAACTCCCAGGTCGGGTGGGAGGCAGTCATTGTTCTTCCAAGATTTGGCATCTCCAATCTCCACGCACAAAGGGAAGTTCT CAAGTCCAGGCCAGGCAGCTGCAGTTTCTGCATTATGGCGTGAGAATTTAGGTGGCTCGGATCTCCCGCCCCCTCCTATGTTCACCTTGGAGGATCGTTC AGATTTCTCTCCCGAGTCCGGTATTCCGGATTACCCTATATCTCCAGATGCCAGATCGGACCCACGAACTCCCTCTCAAGGCTATGGGAGGGAACTGGTG ACCCCTACAAAAGGGAAATCAGAGGGTAGCAGCAGTTCATTTGCGTTGATGAGCGGGCAGAAAGTTCAGCAAGGTTCGGGAAGTTCAAATTGGTGGTCAC CTGCAAAGGCTTCTGGTACTGATAACGAAGATAAGGGAAAGAGTTCTCCAGTTGAGGGTGTCATCCAAAGCAATGCTTTGATTACACTTCCACAACCCAT GGAAGTTGCGAGGCCAGAAATTCAGAGGAACCAATTTCCTACAGCAAGCTTTGATGAAGAAGAATGGGTTACCGTTTATGGATTTCCTCCCAGTGAAACA AACTCTGTGCTGCGGGAATTCGAGAAATGTGGCGTCATATTGAAACATGTTCCTGGTCCCGGGAATGCGAACTGGATGCACATTCTTTATCAGAATCGAT CTGATGCACGTAAAGCCTTGAGCAAGAACGGAATGCAAATCAACGGACTGCTAATCATCGGCGTGAAGCCAGTGGATCCAATGCAACGCCAAGCTCTGAG TGAAAGACTCGACAATCAGGGATTCATGACCCTGCCTCCACCAGCATCAAGTTCGAGTAGGGCAACCGAGTTCAACGCATTGTCGAGACCTGCTTCTCGT CCGTTCTATATCCAACAGAACGGGAGCACGAGTGCTCGACAAACAGGAGGTTCAATCGCTTCCCCGAACAAGTCGCTGGTGTCCAAAGTTTTCGACGTGA TGTTTGGGATTTAA
AA sequence Show only first row Show all	>Lus10037573 pacid=23167151 polypeptide=Lus10037573 locus=Lus10037573.g ID=Lus10037573.BGIv1.0 annot-version=v1.0 MSSAVRKTPRSGGRQSLFFQDLASPISTHKGKFSSPGQAAAVSALWRENLGGSDLPPPPMFTLEDRSDFSPESGIPDYPISPDARSDPRTPSQGYGRELV TPTKGKSEGSSSSFALMSGQKVQQGSGSSNWWSPAKASGTDNEDKGKSSPVEGVIQSNALITLPQPMEVARPEIQRNQFPTASFDEEEWVTVYGFPPSET NSVLREFEKCGVILKHVPGPGNANWMHILYQNRSDARKALSKNGMQINGLLIIGVKPVDPMQRQALSERLDNQGFMTLPPPASSSSRATEFNALSRPASR PFYIQQNGSTSARQTGGSIASPNKSLVSKVFDVMFGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16310			mitotic phosphoprotein N' end ...		Lus10037573 [exp]	0	1
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	3.0	0.8492
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10001480 [exp]	5.7	0.8064
AT3G26750			unknown protein		Lus10016099 [exp]	6.7	0.8296
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	6.9	0.8623
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	15.2	0.7867
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	16.1	0.8560
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	17.4	0.8194
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	27.9	0.8287
AT3G19910			RING/U-box superfamily protein...		Lus10017385 [exp]	28.7	0.8278
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011957 [exp]	34.4	0.8140

Compare expression of checked genes

Lus10037573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.