Plant FIBer expression Database

Lus10037576 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03120 100 / 5e-26 C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011434
[exp]
103 / 1e-27 AT4G03120 159 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G058400
[exp]
100 / 3e-26 AT4G03120 163 / 1e-50 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF06220 zf-U1 U1 zinc finger
Representative CDS sequence
>Lus10037576 pacid=23167259 polypeptide=Lus10037576 locus=Lus10037576.g ID=Lus10037576.BGIv1.0 annot-version=v1.0
ATGCCTCGGTATTACTGTGACTACTGCGATACTTATCTGACGCACGATTCGCCTTCTGTTAGAAAGCAGCATAATGCGGGGTACAAGCACAAGGCGAATG
TTAGAACATACTACCAGCAGTTTGAAGAGCAGCAGACGCAGAGCTTAATTGACCAGCGGATCAAAGAACATCTAGGTCAAGCTGCAGCATTCCAACAGGT
TGGTGGTGCTTTCAACCAGCATCTGTTAGCTCAAAGGCCTCGCCTTCCGATTTTGCCAACGCCTATGATGCCGATTCCCGGGAATCCTAATCTACCTCCC
GGTGCTCCTTTGCTTCCCGGAATGAGGCCTCCTCTTTTGCCTAGACCCGGCATGCCTCCTGTAGGTTATATGCAGGCTCCAGGTATGCCTCCGATGATGG
CACCACCTGGTGCGCCTTCCTTCCCCGGTCAAGTAAACGGCGGAGGCCCCCCTAGACCTCCTCCAGGAATGGTTCCAACAAGTGCTCCTGGTAGTACACC
AATGCCGGCTGGTTCAGGTCCTCCACCGTCAATGGCTCCACTTCCGAATTATCAACCGAATACAACTGCTCCCGCAAGTGGAGGATATGACAGTTACAAT
GCCAATCCACCAGCTTCTGAAGTTCAGAATTAG
AA sequence
>Lus10037576 pacid=23167259 polypeptide=Lus10037576 locus=Lus10037576.g ID=Lus10037576.BGIv1.0 annot-version=v1.0
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGGAFNQHLLAQRPRLPILPTPMMPIPGNPNLPP
GAPLLPGMRPPLLPRPGMPPVGYMQAPGMPPMMAPPGAPSFPGQVNGGGPPRPPPGMVPTSAPGSTPMPAGSGPPPSMAPLPNYQPNTTAPASGGYDSYN
ANPPASEVQN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03120 C2H2 and C2HC zinc fingers sup... Lus10037576
[exp]
0 1
AT3G58690 Protein kinase superfamily pro... Lus10033606
[exp]
8.1 0.8160
AT1G14650 SWAP (Suppressor-of-White-APri... Lus10025705
[exp]
9.3 0.8545
AT5G55040 DNA-binding bromodomain-contai... Lus10043121
[exp]
9.6 0.7594
AT2G30620 winged-helix DNA-binding trans... Lus10005535
[exp]
13.6 0.8177
AT5G27650 Tudor/PWWP/MBT superfamily pro... Lus10015177
[exp]
15.5 0.7680
AT1G24265 Protein of unknown function (D... Lus10011347
[exp]
18.1 0.8209
AT1G03910 unknown protein Lus10027731
[exp]
18.6 0.7269
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Lus10025329
[exp]
20.2 0.8183
AT2G01710 Chaperone DnaJ-domain superfam... Lus10015891
[exp]
21.9 0.7887
AT5G49400 zinc knuckle (CCHC-type) famil... Lus10037745
[exp]
24.3 0.7945

Lus10037576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.