Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 353 / 5e-122 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 304 / 1e-102 ATSEH soluble epoxide hydrolase (.1) AT2G26750 302 / 8e-102 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 302 / 1e-101 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 290 / 3e-96 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 275 / 1e-91 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 246 / 6e-80 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 41 / 0.0008 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006827 [exp] 598 / 0 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10037559 [exp] 556 / 0 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 341 / 2e-117 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 338 / 6e-116 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 334 / 2e-114 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 323 / 4e-110 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 308 / 3e-104 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 304 / 1e-102 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 301 / 3e-101 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127200 [exp] 365 / 1e-126 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 356 / 4e-123 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 349 / 4e-120 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 328 / 9e-112 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 327 / 1e-111 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 314 / 1e-106 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 311 / 2e-105 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 267 / 4e-88 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 191 / 8e-59 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 189 / 7e-58 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037577 pacid=23167215 polypeptide=Lus10037577 locus=Lus10037577.g ID=Lus10037577.BGIv1.0 annot-version=v1.0 ATGGAGATAACCAACGAAGCAATCCACCACTCCACAATCCAAACCAACGGAATCAACATGCACATCGCCACCGCCGGACCTCCCACCGCGGAATCCACGA TCCTCTTCCTCCACGGATTCCCGGAGCTCTGGTACACGTGGCGCCACCAGCTCCTAGCCATCCCTTCCTTAGGCGACTATCGTTGCGTAGCTCCCGACCT CCGGGGCTACGGCGACACTGACGCCCCTGCATCTCCGGCCAAGTACACCGCCTTCCACATCGTCGGCGATCTCGTCGGTCTCCTCGATTTCTTGGGGGTT AAGAAGGTGTTCGTGGTGGGACATGACTGGGGAGCTGCCATGGGTTGGTATTTTGCTAAGTTCCGACCCGATCGGGTCAGGGGAGTGGTTAACCTTAGCG TCCCCCCGACCCGGCAGTCCCCTGTTTCCAATTTGGTTGATGTCTTCAGGGGTGTTTATGGGGATGATTACTACTTCTGCAGGTTTCAGGAAGTGGGAAA AGCAGAGGAACAATTTGCAAAAGTCGACACAAAGAAACTGATAACCAAGCTGTACACACTGTTCAGCAAACCAGACCCACCAATGGTGCCCAAAGAAACA GGATTCAAAGGGTTATCAGATCCACCAACCTCATTCCTCCCATGGCTGCCGGAAGAAGACGTGGATTACTACGCGTCCAAGTTCGACAAGACCGGGTTCA CCGGAGGACTCAACTACTACCGAGCCTTCTCCCTGACTGGGGAGCTGATGGGGCCATGGAAAGATTCTCAATACCAAGTCCCAGCTAAGTTCATCATTGG GGATCAAGACGTTTGCTACCACATGCCTGGGATGAAGGACTACATTCACAGTGAGGAGTTCAAGAAGGAAGTCCCGCAGCTCGAGGAAGTCGTGGTCATG GAAGGAGTGCCGCATTTTGCGAACTTGGTCAAGCCCGAAGAGGTCACCCGGCACATTGTCGAGTTCATCAAACGCTTCTGA
AA sequence Show only first row Show all	>Lus10037577 pacid=23167215 polypeptide=Lus10037577 locus=Lus10037577.g ID=Lus10037577.BGIv1.0 annot-version=v1.0 MEITNEAIHHSTIQTNGINMHIATAGPPTAESTILFLHGFPELWYTWRHQLLAIPSLGDYRCVAPDLRGYGDTDAPASPAKYTAFHIVGDLVGLLDFLGV KKVFVVGHDWGAAMGWYFAKFRPDRVRGVVNLSVPPTRQSPVSNLVDVFRGVYGDDYYFCRFQEVGKAEEQFAKVDTKKLITKLYTLFSKPDPPMVPKET GFKGLSDPPTSFLPWLPEEDVDYYASKFDKTGFTGGLNYYRAFSLTGELMGPWKDSQYQVPAKFIIGDQDVCYHMPGMKDYIHSEEFKKEVPQLEEVVVM EGVPHFANLVKPEEVTRHIVEFIKRF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037577 [exp]	0	1
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	2.8	0.9612
AT2G45720			ARM repeat superfamily protein...		Lus10036559 [exp]	5.9	0.9493
AT1G44770			unknown protein		Lus10014131 [exp]	7.2	0.9578
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	8.7	0.9500
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	9.6	0.9366
AT5G49710			unknown protein		Lus10000765 [exp]	11.8	0.9512
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	12.0	0.9391
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	13.1	0.9555
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	14.1	0.9496
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	15.0	0.9465

Compare expression of checked genes

Lus10037577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.