Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16230 414 / 2e-141 Predicted eukaryotic LigT (.1.2.3) AT3G16220 234 / 6e-74 Predicted eukaryotic LigT (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006828 [exp] 371 / 3e-125 AT3G16230 129 / 4e-33 Predicted eukaryotic LigT (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186600 [exp] 424 / 3e-145 AT3G16230 479 / 6e-167 Predicted eukaryotic LigT (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [flax] [poplar] 2H PF10469 [flax] [poplar] AKAP7_NLS AKAP7 2'5' RNA ligase-like domain CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10037578 pacid=23167216 polypeptide=Lus10037578 locus=Lus10037578.g ID=Lus10037578.BGIv1.0 annot-version=v1.0 ATGGTCATTTCAAGCTCTCACCTGAGAGTCTATGGTGTCTTCAATTTCGTGAATTCATACGTCAAATCGAAGCAGGTCATCAACTTTCAGGGTCCGAGGT TTTGTTACTGCTGCTGGAGCTTTAATGGTGGAATGGCTGGTGGGAAGGATAAATTAGCTGCTCAGGAAAGAAACAAAAGGGCAAAGGCTAATATGCCTGT GTGGAGACGAGTCTCTACTCATAGTGAAGAGTCCAAACAGGAACTACAGTGCAGCACTTCCAGCTCTATCTCGAATAACCAACAGAGTGTAACCAGTGCC GAAGCTGCAGCGACAATGGCTGGCTCATCTGAAGCATTGGAAGTATCGTCTGCTGGAAAGCATTCGGTGTCAATGGAGGTAGGGGCCTCGCTAATCCGAT TTGTCGTAGGAAAAGGAGGATCTACTAAGGAAAAGATCGAAGCGGAGATGGGCGTTAAGATTATCATTCCTCCTAGATCAAAAGAGGAGGAACCTGTTAT TATTGAAGGCCCTTCAGTTGCTTGTGTAACTAGAGCTGCAGAAATAGTTCAGACGATTCTTGATGAGGCAGTCAGAAGCCGTAATCTTGACTACTCTCAT TTCGTTTCTCTACCTCTGGCTGTTCACCCTGAACTGGTTGGTAAGCTAATCAGTTTCCAGAACTCTGTTCTGGGAGATGATGATAAAATCGGCAAAGAGC ACTCAGAAAATGATTCTAGCGAAGATTCCTCTGAGAATGATGTCAAAGATCGAGAAACAAACAAAAAAGTCGAGGAAGGAAACCAAGTCAGAGTGGATCG GAGTAATATACCTCTTGTCAGCTATGCACCCAAAGCATCACAGGCCAAAGCATCAAATTCTGGTTCTTCATTGGGAATAGAGAGATCCATATTCATCAAA CCCCAAACGTTTCATCTAACTGTACTAATGCTGAAGCTATGGAACAAAGAGAGGGTGAACGCAGCTTCGGAGATTCTGAAGAATATCGCTCCGAAAATAT TGGAAGCCTTGGATAATCGACCGGTCTCTGTCAGACTTAAAGGGTTGGAGTGTATGAAGGGCTCTTTGGCGAAAGCCTGTGTACTTTATGCTGCTGTAGA AGAAACCAATGCTGAAGGCCGACTCATACATGCATGTCCTTCCTTAGCTATCATAGAAATTATCCGTGATGCCTTTACTGAAGGTGGACTTGTTCTGGAG AAAGATGCTAAAGAACAGTTGAAGCTGCACGCCACGCTGATGAATGCGAGGCATAGGAAAGGGAAGCAAAGGAGCAACAGGAACTCATTCGATGCACGAG GCGTCGTGAAGCTCTTCGGAGAAGAGGAGTGGGGCGAGTATCTCATCCGCGAAGCTCATCTCTCGCAACGGTTCGCTTATGATGCTAATGGATACTACCG TTGCTGTGCATCAATACCATTCCCAGAAAGTAATCAAGTAAATTCTGCCTGA
AA sequence Show only first row Show all	>Lus10037578 pacid=23167216 polypeptide=Lus10037578 locus=Lus10037578.g ID=Lus10037578.BGIv1.0 annot-version=v1.0 MVISSSHLRVYGVFNFVNSYVKSKQVINFQGPRFCYCCWSFNGGMAGGKDKLAAQERNKRAKANMPVWRRVSTHSEESKQELQCSTSSSISNNQQSVTSA EAAATMAGSSEALEVSSAGKHSVSMEVGASLIRFVVGKGGSTKEKIEAEMGVKIIIPPRSKEEEPVIIEGPSVACVTRAAEIVQTILDEAVRSRNLDYSH FVSLPLAVHPELVGKLISFQNSVLGDDDKIGKEHSENDSSEDSSENDVKDRETNKKVEEGNQVRVDRSNIPLVSYAPKASQAKASNSGSSLGIERSIFIK PQTFHLTVLMLKLWNKERVNAASEILKNIAPKILEALDNRPVSVRLKGLECMKGSLAKACVLYAAVEETNAEGRLIHACPSLAIIEIIRDAFTEGGLVLE KDAKEQLKLHATLMNARHRKGKQRSNRNSFDARGVVKLFGEEEWGEYLIREAHLSQRFAYDANGYYRCCASIPFPESNQVNSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	0	1
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	2.2	0.9313
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	4.5	0.9021
AT5G63460			SAP domain-containing protein ...		Lus10016762 [exp]	4.9	0.9083
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	5.3	0.9166
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	6.9	0.9296
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	8.7	0.9273
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	9.2	0.9205
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	9.2	0.9202
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035403 [exp]	10.8	0.8975
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	11.5	0.9083

Compare expression of checked genes

Lus10037578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.