Plant FIBer expression Database

Lus10037579 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16200 692 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006829
[exp]
855 / 0 AT3G16200 707 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G051200
[exp]
697 / 0 AT3G16200 687 / 0.0 unknown protein
Potri.001G186200
[exp]
686 / 0 AT3G16200 688 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10037579 pacid=23167103 polypeptide=Lus10037579 locus=Lus10037579.g ID=Lus10037579.BGIv1.0 annot-version=v1.0
ATGATGAAGCATCTATTCAGTCCCAAAGCTCCTCCACCTCCTCAACATTCTTCCTCTTCCCCCGCCGTGGCCGCTGTCGCCGGCAACACAATGCTCGAAC
GAGTCGTCTCTTTCCGCCGCTACGCTCCCCACTCGGACGGCGCACCTCCGTCGGCGTCTTCCTCCTCCGACGAGTCCAAGACCAAACCCCCCAATCTATC
ATCCTTGGCTTCCAACTACATCTCCAGGATGTCTCACTCTTCTTTCCACTGCGTCATCTTCGGCCTCCTCCTCTTCGTCCTCGCCTTGATCGCTTCCATC
ATGTACCGTTCCCGCACCCTCGTCTGCGTCTCCCGCTTCGATCCCAAGTCCCGCGCCAGATTCTTCGGCATCGACGGCCTCGAGTCCGACTTCGGAGCTC
TCGGTGTTCCCTGGTGCAGATCGAAACAAGGCAAGACAGTTGAGTGGACATCCAAAGATCTGACCAAGGCCCTCGAGGAGTTTGTGCCGATTTACGAAAC
TCGTCCCATTAAGAATAACATGTATGGAATGGGGTTTGATCATAGCTTTGGTCTCTGGTTCATGGCACGATGGCTGAAGCCGGATCTGATGATTGAGAGT
GGTGCTTTCAAGGGCCATTCGACTTGGGTTCTTCGTCAAGCAATGCCAGAGACCCGGATCCTTTCGCTTTCTCCACGACACCCTGAGAAGTACTTGAAGA
AGGGTCCTGCTTATGTCGATGGGAATTGCACCTACTTTGCTGGGAAAGATTTTGTCGATTTCGGAAGTGTTGATTGGAAGAATGTGATGAAAAAATATGG
AATTACTGACCTTTCTCGGGTCCTTGTCTTTTTTGACGACCATCAGAATGAACTAAAAAGGATAAAGCAGGCGCTGGATGCCGGCTTTCATCATCTTATA
TTCGAGGACAATTACGATACCGGGACTGGTGATCATTACTCATTGAGGCAGATTTGTGATCAGTCCTATATAAGAGGTGGCGGGCACAGTTGCTTCAGGG
ACAGCGACGAAGCGAGGATCAGGTCGAAACGGAAGAAGTTCTGGGAGAAGGCAGTAGACATGGACGAGCTCTGCGGACAGAACGAAGCATGGTGGGGCGT
TCGAGGATTTATGCGCGACAACTTCAACCACAGTAACAAGATGATATCATACGAGGAACACTTCCAGAACAGCCGGTATATCGAGTCAGTGTTGGATGTT
TACTGGGAGCTCCCGCCCGTGGCAGGTCCTTCCCTCACTCATCAGACTCGGTACGACCCTGCTCGAGTCTCCAGTCCCATCGTCGAAGATGGCCGGCACC
GGTTGTTCCAACGGTTGGGGTTAGGTAGGCTCGAAAACTCTGTATTTAACGGGTATACCCAGATGGTATACCTGCAAGTCTCTCAACAATCTTAG
AA sequence
>Lus10037579 pacid=23167103 polypeptide=Lus10037579 locus=Lus10037579.g ID=Lus10037579.BGIv1.0 annot-version=v1.0
MMKHLFSPKAPPPPQHSSSSPAVAAVAGNTMLERVVSFRRYAPHSDGAPPSASSSSDESKTKPPNLSSLASNYISRMSHSSFHCVIFGLLLFVLALIASI
MYRSRTLVCVSRFDPKSRARFFGIDGLESDFGALGVPWCRSKQGKTVEWTSKDLTKALEEFVPIYETRPIKNNMYGMGFDHSFGLWFMARWLKPDLMIES
GAFKGHSTWVLRQAMPETRILSLSPRHPEKYLKKGPAYVDGNCTYFAGKDFVDFGSVDWKNVMKKYGITDLSRVLVFFDDHQNELKRIKQALDAGFHHLI
FEDNYDTGTGDHYSLRQICDQSYIRGGGHSCFRDSDEARIRSKRKKFWEKAVDMDELCGQNEAWWGVRGFMRDNFNHSNKMISYEEHFQNSRYIESVLDV
YWELPPVAGPSLTHQTRYDPARVSSPIVEDGRHRLFQRLGLGRLENSVFNGYTQMVYLQVSQQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16200 unknown protein Lus10037579
[exp]
0 1
AT3G16200 unknown protein Lus10006829
[exp]
1.7 0.9319
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10014435
[exp]
5.1 0.9246
AT2G17980 ATSLY1 Sec1/munc18-like (SM) proteins... Lus10023936
[exp]
5.5 0.9131
AT1G48480 RKL1 receptor-like kinase 1 (.1) Lus10004040
[exp]
6.0 0.9054
AT1G67930 Golgi transport complex protei... Lus10020754
[exp]
7.4 0.9045
AT3G17440 ATNPSN13, NPSN1... novel plant snare 13 (.1.2) Lus10018338
[exp]
8.1 0.9044
AT5G16760 AtITPK1 inositol \(1,3,4\) P3 5/6-kina... Lus10038765
[exp]
13.0 0.8824
AT5G14790 ARM repeat superfamily protein... Lus10032152
[exp]
15.2 0.8438
AT5G05010 clathrin adaptor complexes med... Lus10017131
[exp]
15.5 0.8953
AT1G67930 Golgi transport complex protei... Lus10007330
[exp]
16.2 0.8820

Lus10037579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.