Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79810 478 / 6e-171 PEX2, TED3, ATPEX2 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006832 [exp] 610 / 0 AT1G79810 508 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051500 [exp] 508 / 0 AT1G79810 503 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2) Potri.001G186000 [exp] 499 / 8e-179 AT1G79810 490 / 2e-175 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF04757 [flax] [poplar] Pex2_Pex12 Pex2 / Pex12 amino terminal region
Representative CDS sequence Show only first row Show all	>Lus10037580 pacid=23167141 polypeptide=Lus10037580 locus=Lus10037580.g ID=Lus10037580.BGIv1.0 annot-version=v1.0 ATGGCCAGCTCCTCCTCCGGCGCCATTTCCACGCCACCGCCTGACGAATGGCGACGCGCGCACCAACGGTTGCTTCCTCAATCGGAGTCCCTCGCTTCTT CTGTGGCACAGCCTCCTCAGTTGCCGATCTCGATTTCTAGGGTTAACCAGTTCGACGCCGGGAGGCTGGATGTTGAAATGTCGGCTATGTTGAAGGAACA GCTGGTTAAGGTCTTCTCACTGATGAAGCCAGGGATGTTGTTTCAATATGAGCCGGAACTTGATGCATTCCTCGAGTTTCTGATTTGGAGATTCTCTATT TGGGTAGATAAGCCTACTCCTGGGAACGCTCTCATGAATCTGAGGTATCGAGATGAAGGTGCCCGCCAACTTAGAGGCAAATTGAGAACAGGCTTGGAAG GACCGGGACTTACGATGTGTCAGAAACTCTGGTATTGCATTGCTACTGTAGGTGGTCAGTACTTCTGGGCACGATTACAATCATTCTCTGCCTTTCGTAG ATGGGGTGACTCTCAACAGCGGCCATTGGCACGTAGAGCTTGGGTTTTAATACAACACATTGAAGGACTTTATAAAGCTGCTTCTTTCGCAAACCTACTC TTATTTCTTTACACTGGAAGGTTCAGAAATCTCGTCGAAAGGATTTTGAAAGCCAGGCTTGTGTACGGAAACCCCAATATGAATAGAGCTGTTAGCTTCG AGTACATGAATCGCCAACTAGTGTGGAACGAATTTTCGGAGATGCTATTGTTACTCCTTCCTCTTCTCAACTCATCATCCTTTAAAAGCCTATTTAGCCC ATTCTCAAAGAACAAGTCTTCAACTTCCACAGAAGACGATGGCTCTTGCCCGATTTGCCAGGCGACTCCATCGATCCCCTTTCTTGCTCACCCCTGTCAG CATAGGTACTGCTACTACTGTCTAAGAACACGCTGCGCTGCTACCCCATCGTTCCGGTGTCCAAGATGCAACGAGCCCGTGGCTGCGATGCAGCGAGATG GTGGTTTGATTAATAACACTCGTACCGATCAATAG
AA sequence Show only first row Show all	>Lus10037580 pacid=23167141 polypeptide=Lus10037580 locus=Lus10037580.g ID=Lus10037580.BGIv1.0 annot-version=v1.0 MASSSSGAISTPPPDEWRRAHQRLLPQSESLASSVAQPPQLPISISRVNQFDAGRLDVEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSI WVDKPTPGNALMNLRYRDEGARQLRGKLRTGLEGPGLTMCQKLWYCIATVGGQYFWARLQSFSAFRRWGDSQQRPLARRAWVLIQHIEGLYKAASFANLL LFLYTGRFRNLVERILKARLVYGNPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSFKSLFSPFSKNKSSTSTEDDGSCPICQATPSIPFLAHPCQ HRYCYYCLRTRCAATPSFRCPRCNEPVAAMQRDGGLINNTRTDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	0	1
AT2G02080	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1...		Lus10031928 [exp]	3.9	0.6796
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	4.5	0.6969
AT3G13800			Metallo-hydrolase/oxidoreducta...		Lus10004844 [exp]	5.1	0.6929
AT2G33490			hydroxyproline-rich glycoprote...		Lus10002580 [exp]	8.8	0.6378
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10006832 [exp]	17.7	0.6467
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10000200 [exp]	21.2	0.6228
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	21.2	0.6462
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	25.6	0.6250
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	27.9	0.6732
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	28.5	0.5991

Compare expression of checked genes

Lus10037580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.