Plant FIBer expression Database

Lus10037581 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16190 299 / 1e-104 Isochorismatase family protein (.1)
AT5G23230 59 / 6e-11 NIC2 nicotinamidase 2 (.1)
AT5G23220 59 / 1e-10 NIC3 nicotinamidase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006833
[exp]
382 / 2e-137 AT3G16190 295 / 4e-103 Isochorismatase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G051700
[exp]
327 / 2e-115 AT3G16190 269 / 6e-93 Isochorismatase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00857 Isochorismatase Isochorismatase family
Representative CDS sequence
>Lus10037581 pacid=23167071 polypeptide=Lus10037581 locus=Lus10037581.g ID=Lus10037581.BGIv1.0 annot-version=v1.0
ATGGCGGGGAAATGGAAGCAAACTGCTCTCTTAGTCATCGACATGCAGAATGATTTCATCCTGGATGGTTCGCCGGTGACAGTCGCCGGAGGGAAAGCTA
TTGTACCAAACGTAATCAAAGCCGTCGAAATTGCCCGGCAGCGGGGAATCCTCGTTGTTTGGGTGGTTCGAGAGCACGACCTCCAAGGTCGAGACGTCGA
GGTTTTTCGTCGCCATTTGTACTCGTCGGGAGGGAATGTAGGCCCTACCACCAAAGGGAGTGCAGGTTCTGAGCTCGTCGACGGACTTGTGATCAAAGAA
GGAGACTACAAGGTTGTGAAGACGAGGTTTAGTGCATTCTTCGCCACGCATCTTCATTCGTTTCTCAAGACCGAAGGGATCGAGAATCTCGTGGTTATCG
GAGTTCAGACTCCAAACTGCATCAGGCAGACTGTGTTTGATGCTGTAGCGTTGGATTACCCATCGGTTTCCGTTGTCTTGGATGCTACAGCAGCTGCCAC
CCCTGATGTACATCAAGCTAATGTTTTCGACATGAAGAACATCGGAGTTGCAACTCCGACATTGCAGGAGTGGTCTGATTCTTGA
AA sequence
>Lus10037581 pacid=23167071 polypeptide=Lus10037581 locus=Lus10037581.g ID=Lus10037581.BGIv1.0 annot-version=v1.0
MAGKWKQTALLVIDMQNDFILDGSPVTVAGGKAIVPNVIKAVEIARQRGILVVWVVREHDLQGRDVEVFRRHLYSSGGNVGPTTKGSAGSELVDGLVIKE
GDYKVVKTRFSAFFATHLHSFLKTEGIENLVVIGVQTPNCIRQTVFDAVALDYPSVSVVLDATAAATPDVHQANVFDMKNIGVATPTLQEWSDS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G16190 Isochorismatase family protein... Lus10037581
[exp]
0 1
AT4G01995 unknown protein Lus10012004
[exp]
1.4 0.8677
AT5G18100 CSD3 copper/zinc superoxide dismuta... Lus10010651
[exp]
4.2 0.8680
AT4G07990 Chaperone DnaJ-domain superfam... Lus10012482
[exp]
5.3 0.8537
AT3G15790 MBD11, ATMBD11 methyl-CPG-binding domain 11 (... Lus10043263
[exp]
5.5 0.8538
AT2G28930 APK1B protein kinase 1B (.1.2.3) Lus10040806
[exp]
7.4 0.8521
AT3G52050 5'-3' exonuclease family prote... Lus10035938
[exp]
10.0 0.7900
AT1G54870 NAD(P)-binding Rossmann-fold s... Lus10033745
[exp]
12.0 0.8412
AT5G60335 Thioesterase superfamily prote... Lus10028483
[exp]
12.0 0.8358
AT4G37020 unknown protein Lus10000435
[exp]
13.4 0.8405
AT1G62940 ACOS5 acyl-CoA synthetase 5 (.1) Lus10038259
[exp]
14.5 0.7780

Lus10037581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.